Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39684 * 119.14108 * 2 1 4 4 C 1.35631 * 121.81718 * 179.97438 * 3 2 1 5 5 C 1.41149 * 119.60192 * 0.02562 * 4 3 2 6 6 N 1.32068 * 134.68918 * 179.97438 * 5 4 3 7 7 N 1.39953 * 108.96260 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.02731 * 179.97438 * 7 6 5 9 9 C 1.33990 * 109.95415 * 0.24517 * 7 6 5 10 10 C 1.38241 * 107.90997 * 359.60842 * 9 7 6 11 11 C 1.35663 * 119.13747 * 179.97438 * 2 1 3 12 12 C 1.50704 * 120.22882 * 0.02562 * 11 2 1 13 13 C 1.53003 * 109.46979 * 268.47673 * 12 11 2 14 14 C 1.50694 * 109.46917 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00510 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99646 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00452 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47138 * 89.99905 * 18 16 14 20 20 H 1.48495 * 109.47343 * 209.99916 * 18 16 14 21 21 H 1.48502 * 109.46675 * 330.00207 * 18 16 14 22 22 H 1.08998 * 109.47231 * 95.48427 * 1 2 3 23 23 H 1.08997 * 109.47305 * 215.49062 * 1 2 3 24 24 H 1.09005 * 109.46803 * 335.48907 * 1 2 3 25 25 H 1.07998 * 119.08634 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.19984 * 179.97438 * 4 3 2 27 27 H 1.08010 * 126.04568 * 179.75321 * 9 7 6 28 28 H 1.09000 * 109.46965 * 28.47523 * 12 11 2 29 29 H 1.09001 * 109.47084 * 148.47690 * 12 11 2 30 30 H 1.09002 * 109.46850 * 300.00185 * 13 12 11 31 31 H 1.09001 * 109.47199 * 60.00087 * 13 12 11 32 32 H 0.96996 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2200 0.0000 4 6 3.5420 1.2834 0.0005 5 6 4.2958 0.0900 0.0005 6 7 5.5856 -0.1939 0.0005 7 7 5.7453 -1.5842 -0.0001 8 1 6.5979 -2.0467 -0.0005 9 6 4.5462 -2.1822 -0.0058 10 6 3.5787 -1.1948 -0.0001 11 6 2.1675 -1.1850 0.0005 12 6 1.3996 -2.4817 0.0005 13 6 1.1722 -2.9397 1.4426 14 6 0.4038 -4.2360 1.4426 15 1 0.1076 -4.6882 0.5077 16 6 0.0797 -4.8453 2.6362 17 7 0.4408 -4.2949 3.7748 18 14 -0.8722 -6.4526 2.6363 19 1 0.0798 -7.5917 2.5992 20 1 -1.6989 -6.5383 3.8669 21 1 -1.7542 -6.5055 1.4428 22 1 -0.3633 -0.0982 -1.0229 23 1 -0.3634 -0.8367 0.5966 24 1 -0.3633 0.9351 0.4264 25 1 1.6185 2.1382 0.0004 26 1 4.0411 2.2411 0.0001 27 1 4.3672 -3.2474 -0.0113 28 1 0.4374 -2.3341 -0.4899 29 1 1.9684 -3.2408 -0.5364 30 1 2.1344 -3.0872 1.9329 31 1 0.6033 -2.1806 1.9795 32 1 0.2131 -4.7237 4.6145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = 50.111495 kcal Electronic energy + Delta-G solvation = -15333.383851 eV Core-core repulsion = 12872.726077 eV Total energy + Delta-G solvation = -2460.657774 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18907 -38.92612 -35.91063 -34.26707 -32.62777 -31.36169 -30.56073 -27.80194 -26.39181 -24.53146 -23.02248 -21.96840 -20.33199 -19.16576 -18.46226 -17.25603 -16.50168 -16.16425 -15.99961 -15.81342 -14.76076 -14.43383 -14.22883 -14.03103 -13.87353 -13.18931 -12.95970 -12.78897 -12.58424 -12.56072 -12.23670 -12.22112 -11.81819 -11.58296 -11.35614 -10.93843 -10.75707 -10.50781 -9.57601 -8.34708 -8.13978 -6.26655 -0.25400 0.92321 1.43143 1.44227 1.51525 1.55614 1.88707 2.44174 2.92122 3.18045 3.39714 3.80341 4.16035 4.23797 4.34329 4.43581 4.61525 4.71012 4.82387 4.90956 4.96079 4.99520 5.11749 5.31990 5.40635 5.55512 5.56889 5.58868 5.75407 5.90207 6.02220 6.08929 6.28169 6.30528 6.64840 6.91140 7.42751 8.96016 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.007017 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.285733 B = 3989.285257 C = 4588.605069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.151 4.151 3 C -0.055 4.055 4 C -0.137 4.137 5 C 0.085 3.915 6 N -0.344 5.344 7 N -0.415 5.415 8 H 0.458 0.542 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.008 4.008 12 C -0.066 4.066 13 C 0.045 3.955 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.261 1.261 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.212 0.788 28 H 0.070 0.930 29 H 0.065 0.935 30 H -0.013 1.013 31 H -0.010 1.010 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 6.310 -9.001 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.077 4.077 4 C -0.158 4.158 5 C -0.068 4.068 6 N -0.173 5.173 7 N -0.117 5.117 8 H 0.306 0.694 9 C -0.059 4.059 10 C -0.237 4.237 11 C -0.011 4.011 12 C -0.104 4.104 13 C 0.008 3.992 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.186 1.186 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.097 0.903 25 H 0.173 0.827 26 H 0.162 0.838 27 H 0.228 0.772 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.724 6.800 -8.824 13.012 hybrid contribution -0.648 -1.496 0.560 1.724 sum 6.077 5.304 -8.264 11.548 Atomic orbital electron populations 1.20764 0.90494 1.02707 1.02349 1.19440 0.97055 0.92425 1.06374 1.20862 0.93552 0.97853 0.95450 1.20057 0.93187 0.94949 1.07613 1.21337 0.90657 0.95698 0.99093 1.77458 1.16363 0.90754 1.32741 1.46210 1.08676 1.04920 1.51898 0.69423 1.23144 0.84820 1.00025 0.97959 1.19795 0.94590 0.92889 1.16380 1.19302 0.90699 0.95882 0.95196 1.20598 0.98808 0.92567 0.98377 1.18804 0.94612 0.94466 0.91326 1.21703 1.35372 1.07758 0.92738 0.91748 1.25942 0.97068 1.01358 0.95252 1.70121 1.48155 1.41129 0.98015 0.85499 0.78705 0.79390 0.77775 1.19813 1.21183 1.18554 0.90508 0.93224 0.90345 0.82667 0.83812 0.77169 0.91158 0.91664 0.99441 0.99180 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 8.93 71.23 0.64 -2.58 16 2 C -0.15 -5.13 5.84 -20.11 -0.12 -5.24 16 3 C -0.06 -1.59 9.50 22.02 0.21 -1.38 16 4 C -0.14 -4.17 10.08 22.38 0.23 -3.94 16 5 C 0.08 2.98 7.49 42.16 0.32 3.29 16 6 N -0.34 -11.35 12.70 -48.70 -0.62 -11.96 16 7 N -0.41 -10.83 7.18 -56.34 -0.40 -11.24 16 8 H 0.46 7.71 8.96 -213.42 -1.91 5.80 16 9 C 0.10 2.90 11.82 84.36 1.00 3.90 16 10 C -0.23 -8.19 6.13 -20.23 -0.12 -8.31 16 11 C -0.01 -0.32 5.15 -19.75 -0.10 -0.42 16 12 C -0.07 -2.70 4.53 29.85 0.14 -2.56 16 13 C 0.05 2.33 4.82 29.85 0.14 2.47 16 14 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 18 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.79 6.00 -2.39 -0.01 1.78 16 24 H 0.08 1.97 8.01 -2.38 -0.02 1.95 16 25 H 0.16 3.27 8.03 -2.91 -0.02 3.25 16 26 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.21 5.03 8.06 -2.91 -0.02 5.00 16 28 H 0.07 2.75 6.62 -2.39 -0.02 2.73 16 29 H 0.06 2.48 7.97 -2.39 -0.02 2.46 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H -0.01 -0.58 7.38 -2.39 -0.02 -0.60 16 32 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -70.18 274.31 3.52 -66.66 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -0.78 Total: 11.02 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 3.02 Total: -43.62 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -0.74 Total: -79.36 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -70.18 3.52 -66.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.770 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds