Wall clock time and date at job start Sun Mar 29 2020 21:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99898 * 3 2 1 5 5 H 1.48497 * 109.47188 * 29.99529 * 3 2 1 6 6 H 1.48490 * 109.47029 * 149.99905 * 3 2 1 7 7 C 1.37874 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47135 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47014 * 179.97438 * 11 10 9 13 13 C 1.30994 * 119.99944 * 125.00402 * 12 11 10 14 14 C 1.50706 * 119.99873 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46982 * 124.99910 * 14 13 12 16 16 C 1.38234 * 120.00257 * 90.00130 * 15 14 13 17 17 C 1.38238 * 119.99675 * 180.27927 * 16 15 14 18 18 C 1.38228 * 120.00120 * 359.47825 * 17 16 15 19 19 C 1.38234 * 120.00000 * 0.52176 * 18 17 16 20 20 C 1.38234 * 119.99503 * 270.01730 * 15 14 13 21 21 H 0.96998 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47244 * 60.00091 * 9 7 2 23 23 H 1.08997 * 109.47149 * 299.99811 * 9 7 2 24 24 H 1.08998 * 109.47164 * 59.99926 * 10 9 7 25 25 H 1.08997 * 109.46941 * 299.99821 * 10 9 7 26 26 H 1.08998 * 109.46913 * 59.99425 * 11 10 9 27 27 H 1.09002 * 109.46736 * 300.00080 * 11 10 9 28 28 H 1.08008 * 119.99923 * 304.99450 * 12 11 10 29 29 H 1.08001 * 120.00519 * 359.97438 * 13 12 11 30 30 H 1.08988 * 109.47229 * 4.99365 * 14 13 12 31 31 H 1.09000 * 109.46558 * 244.99345 * 14 13 12 32 32 H 1.08002 * 119.99744 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.99577 * 179.72816 * 17 16 15 34 34 H 1.07999 * 119.99932 * 180.24104 * 18 17 16 35 35 H 1.08001 * 120.00310 * 179.72161 * 19 18 17 36 36 H 1.07997 * 120.00460 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4597 -6.1325 0.0031 13 6 2.3906 -7.0527 0.9328 14 6 3.3697 -8.1985 0.9331 15 6 4.0658 -8.2641 2.2681 16 6 3.5299 -9.0248 3.2904 17 6 4.1654 -9.0802 4.5168 18 6 5.3424 -8.3837 4.7175 19 6 5.8783 -7.6230 3.6952 20 6 5.2399 -7.5632 2.4704 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8713 -3.6039 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 0.8540 -5.0455 -0.8877 27 1 0.8533 -5.0442 0.8923 28 1 3.2184 -6.1947 -0.7631 29 1 1.6322 -6.9904 1.6992 30 1 4.1076 -8.0460 0.1456 31 1 2.8362 -9.1322 0.7553 32 1 2.6122 -9.5718 3.1325 33 1 3.7444 -9.6711 5.3169 34 1 5.8410 -8.4302 5.6744 35 1 6.7955 -7.0751 3.8533 36 1 5.6583 -6.9683 1.6720 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:33 Heat of formation + Delta-G solvation = 5.593376 kcal Electronic energy + Delta-G solvation = -14442.560346 eV Core-core repulsion = 12083.512465 eV Total energy + Delta-G solvation = -2359.047881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.34978 -36.13995 -34.02183 -32.45890 -30.95361 -30.63977 -27.79176 -25.38933 -22.90386 -22.64229 -21.16711 -19.97714 -19.28562 -16.86221 -16.21442 -15.27135 -15.23546 -14.61616 -14.46111 -13.86006 -13.56133 -13.47351 -13.04097 -12.57555 -12.28606 -12.16892 -11.68028 -11.34903 -11.11766 -11.05062 -10.98643 -10.80593 -10.54557 -10.41598 -9.64615 -9.30563 -9.07961 -8.98979 -8.80804 -8.50995 -8.30780 -5.95953 -3.98066 1.28458 1.33410 2.51642 3.34229 3.40169 3.44044 3.72986 4.49299 4.74628 4.80923 4.92948 5.03901 5.13805 5.27623 5.39530 5.41334 5.45211 5.62788 5.71885 5.89823 5.94209 5.99042 6.07659 6.17111 6.38225 6.43057 6.44750 6.57931 6.72799 6.91055 6.95581 6.97852 7.15397 7.23462 7.72977 7.88851 8.05086 8.48233 9.09348 9.65712 11.15463 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.003941 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.145513 B = 7102.265169 C = 7601.459636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.105 4.105 11 C -0.096 4.096 12 C -0.131 4.131 13 C -0.179 4.179 14 C -0.049 4.049 15 C -0.072 4.072 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.114 4.114 21 H 0.260 0.740 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -18.748 5.550 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.142 4.142 11 C -0.133 4.133 12 C -0.149 4.149 13 C -0.197 4.197 14 C -0.086 4.086 15 C -0.072 4.072 16 C -0.138 4.138 17 C -0.139 4.139 18 C -0.148 4.148 19 C -0.136 4.136 20 C -0.132 4.132 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.256 -18.627 5.554 21.118 hybrid contribution 0.422 1.037 0.083 1.123 sum 8.679 -17.590 5.637 20.408 Atomic orbital electron populations 1.69970 1.06052 1.26511 1.51107 1.25033 0.94846 0.99228 0.95424 0.86606 0.79870 0.83537 0.78072 1.20682 1.21230 1.19892 1.21292 0.93040 0.91196 1.50250 0.92752 1.19125 0.94078 0.91440 0.97133 1.21576 0.99023 0.93394 1.00247 1.20857 0.96854 0.93757 1.01818 1.23098 0.99034 0.95036 0.97711 1.22588 1.00162 0.96662 1.00270 1.19680 0.96921 0.98206 0.93772 1.19888 0.94908 0.96411 0.95945 1.21056 0.99891 0.99670 0.93152 1.21120 0.95834 0.99792 0.97136 1.21119 0.96570 0.98067 0.98996 1.21159 1.00067 0.98963 0.93434 1.21101 0.95463 0.99021 0.97615 0.93060 0.96650 0.96684 0.93462 0.93447 0.91485 0.92106 0.87831 0.87488 0.90813 0.90566 0.86177 0.86285 0.86355 0.86153 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.24 5.14 -26.73 -0.14 -2.38 16 11 C -0.10 -1.69 5.66 -27.88 -0.16 -1.85 16 12 C -0.13 -1.93 9.12 -36.03 -0.33 -2.26 16 13 C -0.18 -2.38 9.10 -36.02 -0.33 -2.71 16 14 C -0.05 -0.54 5.79 -29.03 -0.17 -0.71 16 15 C -0.07 -0.84 5.12 -104.62 -0.54 -1.37 16 16 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 17 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 18 C -0.13 -1.31 10.05 -39.59 -0.40 -1.71 16 19 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 20 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.08 7.79 -51.93 -0.40 0.68 16 28 H 0.10 1.41 7.84 -52.48 -0.41 1.00 16 29 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 30 H 0.07 0.76 7.74 -51.94 -0.40 0.36 16 31 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -31.16 309.50 -9.61 -40.76 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -5.82 Total: -2.42 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -4.17 Total: -33.24 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.16 -9.61 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.355 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds