Wall clock time and date at job start Sun Mar 29 2020 21:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99898 * 3 2 1 5 5 H 1.48497 * 109.47188 * 29.99529 * 3 2 1 6 6 H 1.48490 * 109.47029 * 149.99905 * 3 2 1 7 7 C 1.37874 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47135 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47014 * 179.97438 * 11 10 9 13 13 C 1.30994 * 119.99944 * 125.00402 * 12 11 10 14 14 C 1.50706 * 119.99873 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46982 * 124.99910 * 14 13 12 16 16 C 1.38234 * 120.00257 * 90.00130 * 15 14 13 17 17 C 1.38238 * 119.99675 * 180.27927 * 16 15 14 18 18 C 1.38228 * 120.00120 * 359.47825 * 17 16 15 19 19 C 1.38234 * 120.00000 * 0.52176 * 18 17 16 20 20 C 1.38234 * 119.99503 * 270.01730 * 15 14 13 21 21 H 0.96998 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47244 * 60.00091 * 9 7 2 23 23 H 1.08997 * 109.47149 * 299.99811 * 9 7 2 24 24 H 1.08998 * 109.47164 * 59.99926 * 10 9 7 25 25 H 1.08997 * 109.46941 * 299.99821 * 10 9 7 26 26 H 1.08998 * 109.46913 * 59.99425 * 11 10 9 27 27 H 1.09002 * 109.46736 * 300.00080 * 11 10 9 28 28 H 1.08008 * 119.99923 * 304.99450 * 12 11 10 29 29 H 1.08001 * 120.00519 * 359.97438 * 13 12 11 30 30 H 1.08988 * 109.47229 * 4.99365 * 14 13 12 31 31 H 1.09000 * 109.46558 * 244.99345 * 14 13 12 32 32 H 1.08002 * 119.99744 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.99577 * 179.72816 * 17 16 15 34 34 H 1.07999 * 119.99932 * 180.24104 * 18 17 16 35 35 H 1.08001 * 120.00310 * 179.72161 * 19 18 17 36 36 H 1.07997 * 120.00460 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4597 -6.1325 0.0031 13 6 2.3906 -7.0527 0.9328 14 6 3.3697 -8.1985 0.9331 15 6 4.0658 -8.2641 2.2681 16 6 3.5299 -9.0248 3.2904 17 6 4.1654 -9.0802 4.5168 18 6 5.3424 -8.3837 4.7175 19 6 5.8783 -7.6230 3.6952 20 6 5.2399 -7.5632 2.4704 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8713 -3.6039 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 0.8540 -5.0455 -0.8877 27 1 0.8533 -5.0442 0.8923 28 1 3.2184 -6.1947 -0.7631 29 1 1.6322 -6.9904 1.6992 30 1 4.1076 -8.0460 0.1456 31 1 2.8362 -9.1322 0.7553 32 1 2.6122 -9.5718 3.1325 33 1 3.7444 -9.6711 5.3169 34 1 5.8410 -8.4302 5.6744 35 1 6.7955 -7.0751 3.8533 36 1 5.6583 -6.9683 1.6720 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:33 Heat of formation + Delta-G solvation = -8.787988 kcal Electronic energy + Delta-G solvation = -14443.183969 eV Core-core repulsion = 12083.512465 eV Total energy + Delta-G solvation = -2359.671503 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14571 -37.47216 -35.66926 -34.14300 -32.05944 -31.72837 -29.28813 -26.88636 -24.57819 -23.42984 -22.24766 -21.64220 -20.41775 -18.46164 -17.62422 -16.54990 -16.14890 -16.08971 -15.94147 -15.14181 -14.74646 -14.33737 -14.25235 -13.98268 -13.86890 -13.47032 -13.03751 -12.86951 -12.69152 -12.53427 -12.30806 -12.11715 -11.93158 -11.78962 -11.49950 -11.31726 -11.07969 -10.56205 -9.84717 -9.78190 -9.52767 -8.20711 -6.32469 0.47039 0.53431 1.38489 1.40564 1.40887 1.52177 2.40607 2.92016 3.11828 3.88375 4.02818 4.04991 4.20141 4.22276 4.33043 4.39193 4.53428 4.56787 4.67847 4.69536 4.81917 4.91230 5.02274 5.03907 5.19398 5.20943 5.25478 5.28876 5.52534 5.60342 5.65654 5.70982 5.73905 5.81587 5.87427 6.01596 6.18057 6.25192 6.84633 7.36887 8.91198 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.003941 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.145513 B = 7102.265169 C = 7601.459636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.092 4.092 11 C -0.087 4.087 12 C -0.149 4.149 13 C -0.159 4.159 14 C -0.045 4.045 15 C -0.088 4.088 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.136 4.136 19 C -0.131 4.131 20 C -0.134 4.134 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.012 1.012 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -19.376 6.074 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.166 4.166 13 C -0.177 4.177 14 C -0.082 4.082 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.152 4.152 21 H 0.073 0.927 22 H 0.011 0.989 23 H 0.007 0.993 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.589 -19.271 6.075 22.366 hybrid contribution -0.021 1.175 -0.014 1.175 sum 9.568 -18.096 6.061 21.348 Atomic orbital electron populations 1.70103 1.07850 1.27814 1.51715 1.26022 0.95812 1.03475 0.94653 0.85423 0.78625 0.78257 0.78610 1.19564 1.20587 1.18784 1.21739 0.93546 0.92554 1.50575 0.92297 1.19058 0.94542 0.93317 0.94688 1.21378 0.97923 0.93395 1.00299 1.20685 0.97137 0.93105 1.01542 1.22897 0.99479 0.94791 0.99481 1.22753 0.99642 0.96580 0.98695 1.19684 0.96628 0.97877 0.93979 1.20014 0.95243 0.97130 0.96413 1.21336 1.00517 0.99649 0.93274 1.21470 0.95779 0.99737 0.97572 1.21462 0.96693 0.97498 0.99742 1.21435 1.00721 0.99331 0.93406 1.21299 0.96042 0.99597 0.98262 0.92725 0.98922 0.99317 0.93738 0.92862 0.91577 0.92762 0.86428 0.87995 0.90043 0.88689 0.84695 0.84085 0.84250 0.84787 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.29 9.11 25.60 0.23 -32.06 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.09 -3.99 5.14 30.60 0.16 -3.83 16 11 C -0.09 -3.10 5.66 29.85 0.17 -2.93 16 12 C -0.15 -4.22 9.12 25.65 0.23 -3.99 16 13 C -0.16 -4.00 9.10 25.65 0.23 -3.77 16 14 C -0.04 -0.90 5.79 29.10 0.17 -0.73 16 15 C -0.09 -1.92 5.12 -19.87 -0.10 -2.03 16 16 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 17 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 18 C -0.14 -2.50 10.05 22.27 0.22 -2.28 16 19 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 20 C -0.13 -3.01 9.70 22.27 0.22 -2.80 16 21 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 23 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 1.96 7.79 -2.39 -0.02 1.94 16 28 H 0.12 3.01 7.84 -2.91 -0.02 2.99 16 29 H 0.10 2.67 7.84 -2.91 -0.02 2.65 16 30 H 0.08 1.52 7.74 -2.39 -0.02 1.50 16 31 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -66.80 309.50 6.13 -60.67 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.01 Total: 9.79 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 2.81 Total: -59.65 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.03 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.80 6.13 -60.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.887 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds