Wall clock time and date at job start Sun Mar 29 2020 21:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38340 * 119.86085 * 2 1 4 4 C 1.37977 * 120.14606 * 180.02562 * 3 2 1 5 5 C 1.39533 * 119.85235 * 359.97140 * 4 3 2 6 6 C 1.47816 * 120.13942 * 180.02562 * 5 4 3 7 7 C 1.32570 * 119.99989 * 180.02562 * 6 5 4 8 8 C 1.50696 * 119.99953 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47242 * 124.99958 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48508 * 109.47394 * 329.99535 * 15 13 11 19 19 C 1.39538 * 119.72027 * 0.28188 * 5 4 3 20 20 C 1.37969 * 119.85381 * 359.44028 * 19 5 4 21 21 H 1.09009 * 109.46823 * 89.99943 * 1 2 3 22 22 H 1.08997 * 109.47169 * 209.99875 * 1 2 3 23 23 H 1.08995 * 109.46949 * 330.01091 * 1 2 3 24 24 H 1.08002 * 119.93157 * 359.97438 * 3 2 1 25 25 H 1.07998 * 120.07274 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99925 * 0.02562 * 6 5 4 27 27 H 1.07997 * 119.99978 * 359.97438 * 7 6 5 28 28 H 1.08996 * 109.47390 * 4.99928 * 8 7 6 29 29 H 1.09001 * 109.46948 * 244.99569 * 8 7 6 30 30 H 1.09001 * 109.47502 * 60.00161 * 9 8 7 31 31 H 1.09001 * 109.47289 * 299.99957 * 9 8 7 32 32 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 33 33 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 34 34 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.07118 * 179.72773 * 19 5 4 36 36 H 1.07999 * 119.93567 * 180.27400 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5755 1.2066 -0.0005 5 6 4.2761 -0.0001 -0.0005 6 6 5.7542 -0.0002 -0.0005 7 6 6.4170 -1.1483 -0.0009 8 6 7.9240 -1.1483 -0.0003 9 6 8.4335 -1.9764 1.1810 10 6 9.9636 -1.9759 1.1819 11 6 10.4655 -2.7921 2.3451 12 1 9.7634 -3.2636 3.0167 13 6 11.8210 -2.9359 2.5524 14 7 12.6759 -2.3613 1.7348 15 14 12.4431 -3.9470 3.9946 16 1 12.6092 -5.3611 3.5728 17 1 13.7505 -3.4091 4.4489 18 1 11.4640 -3.8747 5.1089 19 6 3.5754 -1.2068 -0.0058 20 6 2.1957 -1.1999 0.0005 21 1 -0.3633 0.0000 -1.0278 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5136 24 1 1.6524 2.1331 -0.0004 25 1 4.1120 2.1439 -0.0010 26 1 6.2942 0.9351 -0.0001 27 1 5.8770 -2.0835 -0.0009 28 1 8.2874 -0.1247 0.0900 29 1 8.2877 -1.5821 -0.9318 30 1 8.0703 -3.0001 1.0907 31 1 8.0699 -1.5427 2.1125 32 1 10.3276 -2.4095 0.2504 33 1 10.3265 -0.9522 1.2725 34 1 13.6295 -2.4622 1.8809 35 1 4.1119 -2.1441 -0.0102 36 1 1.6521 -2.1331 0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:05 Heat of formation + Delta-G solvation = 3.956854 kcal Electronic energy + Delta-G solvation = -14321.378080 eV Core-core repulsion = 11962.259235 eV Total energy + Delta-G solvation = -2359.118846 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40550 -35.94215 -33.91886 -32.46389 -31.07766 -30.54706 -27.76806 -25.66776 -23.26719 -22.90161 -21.29034 -20.04754 -19.12007 -16.62218 -16.16785 -15.37919 -15.09315 -14.46766 -14.21516 -13.94136 -13.63251 -13.37987 -13.03848 -12.49597 -12.40405 -12.23172 -11.91742 -11.66085 -11.30357 -11.05000 -10.86114 -10.83845 -10.54429 -10.43988 -9.86750 -9.61539 -9.27025 -9.02812 -9.00512 -8.32514 -7.83744 -5.97601 -3.99816 0.95913 1.36490 2.63259 3.33370 3.39410 3.43199 3.89075 4.47959 4.68496 4.72439 4.87540 4.95621 5.09067 5.32005 5.37143 5.38040 5.39458 5.53476 5.61338 5.75551 5.88431 5.96000 6.05871 6.07911 6.25635 6.37677 6.50799 6.51111 6.67269 6.86159 6.92747 6.97658 7.06291 7.18147 7.70799 7.85959 8.03094 8.46097 9.07578 9.64115 11.13793 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.057296 B = 0.003363 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.571767 B = 8324.040781 C = 8569.067003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.043 4.043 6 C -0.155 4.155 7 C -0.111 4.111 8 C -0.098 4.098 9 C -0.106 4.106 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.118 4.118 20 C -0.117 4.117 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.125 0.875 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.440 5.434 -4.896 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.043 4.043 6 C -0.173 4.173 7 C -0.128 4.128 8 C -0.135 4.135 9 C -0.143 4.143 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.136 4.136 20 C -0.135 4.135 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.255 5.462 -4.921 22.490 hybrid contribution 0.497 -0.538 0.790 1.077 sum -20.758 4.924 -4.131 21.730 Atomic orbital electron populations 1.20768 0.91468 1.02568 1.02074 1.19928 0.95907 0.93274 1.00983 1.20930 0.94138 0.97348 1.01297 1.21250 0.93992 0.97487 1.00468 1.19163 0.93540 0.92997 0.98575 1.21618 0.91195 0.98678 1.05784 1.23673 0.97085 0.97477 0.94599 1.20898 0.90440 1.01629 1.00500 1.21597 0.99692 0.97777 0.95250 1.19124 0.88499 0.97106 0.97016 1.21284 0.91569 1.31275 1.11704 0.92726 1.25033 0.97096 0.95924 0.96490 1.69963 1.01979 1.44244 1.37437 0.86603 0.78218 0.80365 0.82873 1.20676 1.21231 1.19876 1.21346 0.94058 0.97856 1.00340 1.20944 0.94102 0.97409 1.01049 0.91415 0.91702 0.91743 0.86292 0.85960 0.86499 0.87287 0.91770 0.91023 0.93335 0.93326 0.96608 0.96616 0.93033 0.85702 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.10 -1.04 5.89 -104.54 -0.62 -1.66 16 3 C -0.12 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.11 -1.33 9.79 -39.19 -0.38 -1.72 16 5 C -0.04 -0.56 5.87 -105.01 -0.62 -1.18 16 6 C -0.15 -2.15 9.52 -37.57 -0.36 -2.50 16 7 C -0.11 -1.63 8.94 -36.22 -0.32 -1.96 16 8 C -0.10 -1.67 5.66 -27.89 -0.16 -1.83 16 9 C -0.11 -2.21 5.14 -26.73 -0.14 -2.34 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.12 -1.46 9.40 -39.20 -0.37 -1.83 16 20 C -0.12 -1.28 9.68 -39.64 -0.38 -1.66 16 21 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 22 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 23 H 0.06 0.41 8.08 -51.93 -0.42 0.00 16 24 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 25 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 26 H 0.12 1.53 7.87 -52.49 -0.41 1.12 16 27 H 0.11 1.49 6.04 -52.49 -0.32 1.17 16 28 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.13 1.43 6.17 -52.49 -0.32 1.11 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -30.91 306.37 -9.23 -40.14 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.64 Total: -2.85 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -3.92 Total: -32.22 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.91 -9.23 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.100 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds