Wall clock time and date at job start Sun Mar 29 2020 21:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38340 * 119.86085 * 2 1 4 4 C 1.37977 * 120.14606 * 180.02562 * 3 2 1 5 5 C 1.39533 * 119.85235 * 359.97140 * 4 3 2 6 6 C 1.47816 * 120.13942 * 180.02562 * 5 4 3 7 7 C 1.32570 * 119.99989 * 180.02562 * 6 5 4 8 8 C 1.50696 * 119.99953 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47242 * 124.99958 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48508 * 109.47394 * 329.99535 * 15 13 11 19 19 C 1.39538 * 119.72027 * 0.28188 * 5 4 3 20 20 C 1.37969 * 119.85381 * 359.44028 * 19 5 4 21 21 H 1.09009 * 109.46823 * 89.99943 * 1 2 3 22 22 H 1.08997 * 109.47169 * 209.99875 * 1 2 3 23 23 H 1.08995 * 109.46949 * 330.01091 * 1 2 3 24 24 H 1.08002 * 119.93157 * 359.97438 * 3 2 1 25 25 H 1.07998 * 120.07274 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99925 * 0.02562 * 6 5 4 27 27 H 1.07997 * 119.99978 * 359.97438 * 7 6 5 28 28 H 1.08996 * 109.47390 * 4.99928 * 8 7 6 29 29 H 1.09001 * 109.46948 * 244.99569 * 8 7 6 30 30 H 1.09001 * 109.47502 * 60.00161 * 9 8 7 31 31 H 1.09001 * 109.47289 * 299.99957 * 9 8 7 32 32 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 33 33 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 34 34 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.07118 * 179.72773 * 19 5 4 36 36 H 1.07999 * 119.93567 * 180.27400 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5755 1.2066 -0.0005 5 6 4.2761 -0.0001 -0.0005 6 6 5.7542 -0.0002 -0.0005 7 6 6.4170 -1.1483 -0.0009 8 6 7.9240 -1.1483 -0.0003 9 6 8.4335 -1.9764 1.1810 10 6 9.9636 -1.9759 1.1819 11 6 10.4655 -2.7921 2.3451 12 1 9.7634 -3.2636 3.0167 13 6 11.8210 -2.9359 2.5524 14 7 12.6759 -2.3613 1.7348 15 14 12.4431 -3.9470 3.9946 16 1 12.6092 -5.3611 3.5728 17 1 13.7505 -3.4091 4.4489 18 1 11.4640 -3.8747 5.1089 19 6 3.5754 -1.2068 -0.0058 20 6 2.1957 -1.1999 0.0005 21 1 -0.3633 0.0000 -1.0278 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5136 24 1 1.6524 2.1331 -0.0004 25 1 4.1120 2.1439 -0.0010 26 1 6.2942 0.9351 -0.0001 27 1 5.8770 -2.0835 -0.0009 28 1 8.2874 -0.1247 0.0900 29 1 8.2877 -1.5821 -0.9318 30 1 8.0703 -3.0001 1.0907 31 1 8.0699 -1.5427 2.1125 32 1 10.3276 -2.4095 0.2504 33 1 10.3265 -0.9522 1.2725 34 1 13.6295 -2.4622 1.8809 35 1 4.1119 -2.1441 -0.0102 36 1 1.6521 -2.1331 0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:05 Heat of formation + Delta-G solvation = -10.438105 kcal Electronic energy + Delta-G solvation = -14322.002293 eV Core-core repulsion = 11962.259235 eV Total energy + Delta-G solvation = -2359.743058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25614 -37.30617 -35.51774 -34.06817 -32.12302 -31.72886 -29.18654 -27.00594 -24.89049 -23.79405 -22.43616 -21.69899 -20.20071 -18.45469 -17.49466 -16.55550 -16.23528 -16.04797 -15.60605 -14.80101 -14.62071 -14.37955 -14.24636 -14.16930 -13.78060 -13.24260 -13.08437 -12.96438 -12.74643 -12.66876 -12.41286 -12.25136 -12.00307 -11.69567 -11.50204 -11.31985 -11.13234 -10.69184 -10.55919 -9.85174 -8.83485 -8.20535 -6.32089 0.02308 0.51767 1.39169 1.40897 1.52117 1.61144 2.40675 2.99781 3.12067 3.75283 3.87784 4.07417 4.11563 4.19063 4.35441 4.48297 4.53168 4.55247 4.58964 4.80992 4.85918 4.90489 4.98273 5.01378 5.18071 5.23875 5.25517 5.29559 5.42549 5.52885 5.53300 5.70865 5.72776 5.80359 5.86366 5.96273 6.13956 6.25494 6.85164 7.37193 8.91250 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.057296 B = 0.003363 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.571767 B = 8324.040781 C = 8569.067003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.073 4.073 6 C -0.138 4.138 7 C -0.130 4.130 8 C -0.087 4.087 9 C -0.093 4.093 10 C 0.021 3.979 11 C -0.546 4.546 12 H 0.059 0.941 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.130 4.130 20 C -0.128 4.128 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.046 0.954 32 H -0.007 1.007 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.127 0.873 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.504 5.336 -4.229 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.073 4.073 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.124 4.124 9 C -0.131 4.131 10 C -0.016 4.016 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.148 4.148 20 C -0.146 4.146 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.161 0.839 25 H 0.152 0.848 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.337 5.365 -4.258 24.321 hybrid contribution 1.035 -0.433 0.544 1.247 sum -22.302 4.932 -3.714 23.140 Atomic orbital electron populations 1.20833 0.89236 1.03645 1.03084 1.20367 0.97649 0.92936 0.99091 1.21269 0.93825 0.98618 1.00698 1.21499 0.94848 0.97512 0.99967 1.19242 0.93030 0.94058 1.00956 1.21770 0.92057 0.98476 1.03304 1.23427 0.95297 0.98458 0.97562 1.20692 0.92382 1.00582 0.98742 1.21393 0.95800 0.98917 0.96979 1.19053 0.92229 0.94991 0.95297 1.21739 0.92261 1.31785 1.12566 0.92304 1.26013 0.97338 0.97085 0.99565 1.70095 1.02435 1.45564 1.39381 0.85433 0.77708 0.78711 0.79121 1.19626 1.20618 1.18782 1.21522 0.94960 0.97786 1.00488 1.21240 0.93722 0.98728 1.00864 0.90298 0.90823 0.90556 0.83910 0.84783 0.86088 0.86304 0.92014 0.91113 0.92860 0.93497 0.98869 0.99073 0.92728 0.85520 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.23 0.71 -0.58 16 2 C -0.10 -1.82 5.89 -19.81 -0.12 -1.94 16 3 C -0.13 -2.36 9.68 22.23 0.22 -2.14 16 4 C -0.12 -2.63 9.79 22.52 0.22 -2.41 16 5 C -0.07 -1.85 5.87 -20.12 -0.12 -1.97 16 6 C -0.14 -3.76 9.52 23.65 0.23 -3.54 16 7 C -0.13 -3.80 8.94 24.53 0.22 -3.58 16 8 C -0.09 -3.02 5.66 29.85 0.17 -2.85 16 9 C -0.09 -3.97 5.14 30.60 0.16 -3.81 16 10 C 0.02 1.16 4.97 29.85 0.15 1.31 16 11 C -0.55 -32.01 9.11 25.60 0.23 -31.77 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 14 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 15 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 C -0.13 -3.08 9.40 22.52 0.21 -2.87 16 20 C -0.13 -2.56 9.68 22.23 0.22 -2.34 16 21 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 22 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 23 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 24 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 25 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 26 H 0.12 3.11 7.87 -2.91 -0.02 3.08 16 27 H 0.12 3.21 6.04 -2.91 -0.02 3.19 16 28 H 0.06 2.14 7.81 -2.39 -0.02 2.12 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.13 2.83 6.17 -2.91 -0.02 2.81 16 36 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -66.43 306.37 6.29 -60.13 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.03 Total: 8.72 kcal Atomic # 6 Polarization: -61.14 SS G_CDS: 2.95 Total: -58.18 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.28 Total: -57.75 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.43 6.29 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.696 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds