Wall clock time and date at job start Sun Mar 29 2020 21:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.38239 * 120.98341 * 264.72216 * 12 11 10 14 14 C 1.38626 * 119.41495 * 179.81327 * 13 12 11 15 15 N 1.31609 * 121.58021 * 0.45577 * 14 13 12 16 16 C 1.32622 * 121.67319 * 359.77625 * 15 14 13 17 17 N 1.37434 * 133.19477 * 179.97438 * 16 15 14 18 18 H 0.96997 * 124.98440 * 359.97438 * 17 16 15 19 19 C 1.36917 * 110.02342 * 180.02562 * 17 16 15 20 20 C 1.34227 * 109.92263 * 0.02562 * 19 17 16 21 21 C 1.39655 * 120.97818 * 84.99721 * 12 11 10 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08001 * 120.28569 * 359.97438 * 13 12 11 30 30 H 1.07996 * 119.20493 * 180.25978 * 14 13 12 31 31 H 1.08005 * 125.03523 * 180.02562 * 19 17 16 32 32 H 1.08003 * 126.56354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4597 -6.1325 0.0024 13 6 2.8392 -6.7447 -1.1775 14 6 3.7453 -7.7932 -1.1397 15 7 4.2489 -8.2283 -0.0044 16 6 3.9182 -7.6831 1.1585 17 7 4.2879 -7.9400 2.4570 18 1 4.9098 -8.6319 2.7316 19 6 3.6486 -7.0768 3.3060 20 6 2.8586 -6.2477 2.6058 21 6 3.0062 -6.6106 1.1953 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 0.8541 -5.0447 0.8922 28 1 0.8534 -5.0451 -0.8877 29 1 2.4353 -6.4073 -2.1206 30 1 4.0427 -8.2662 -2.0639 31 1 3.7631 -7.0648 4.3799 32 1 2.2345 -5.4625 3.0064 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:42 Heat of formation + Delta-G solvation = 47.004377 kcal Electronic energy + Delta-G solvation = -14928.588364 eV Core-core repulsion = 12467.795856 eV Total energy + Delta-G solvation = -2460.792508 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.35884 -37.78110 -35.21705 -33.06838 -31.21980 -29.92024 -29.10465 -26.99244 -23.97372 -22.48579 -22.03030 -20.43105 -19.99575 -17.78883 -16.52130 -16.16662 -15.49041 -14.90027 -14.83508 -14.44623 -13.74685 -13.14259 -12.94276 -12.75189 -12.49295 -12.03342 -11.91552 -11.78043 -11.15590 -10.79982 -10.71558 -10.51660 -9.93262 -9.63992 -9.39754 -9.15806 -8.97684 -8.32211 -8.29694 -7.85335 -5.96882 -3.98950 1.17271 1.57791 2.80904 2.87257 3.35511 3.39571 3.42533 4.07135 4.48748 4.64451 4.84228 4.92880 5.12055 5.34132 5.38822 5.50739 5.76972 5.81621 5.93893 6.01285 6.09969 6.37299 6.48398 6.60894 6.66256 6.90412 6.92846 7.10409 7.17855 7.37271 7.71210 7.86164 8.03610 8.16239 8.46690 9.07971 9.64864 11.14381 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036449 B = 0.005270 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.006502 B = 5311.995419 C = 5626.745280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.100 4.100 11 C -0.085 4.085 12 C 0.028 3.972 13 C -0.211 4.211 14 C 0.139 3.861 15 N -0.516 5.516 16 C 0.282 3.718 17 N -0.587 5.587 18 H 0.415 0.585 19 C 0.046 3.954 20 C -0.180 4.180 21 C -0.153 4.153 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -15.515 3.428 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.138 4.138 11 C -0.123 4.123 12 C 0.019 3.981 13 C -0.232 4.232 14 C -0.026 4.026 15 N -0.230 5.230 16 C 0.049 3.951 17 N -0.194 5.194 18 H 0.252 0.748 19 C -0.079 4.079 20 C -0.205 4.205 21 C -0.159 4.159 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.193 0.807 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.430 -16.162 3.567 17.756 hybrid contribution 0.217 1.317 0.137 1.342 sum 6.647 -14.844 3.704 16.681 Atomic orbital electron populations 1.69950 1.06026 1.26647 1.50960 1.25010 0.94827 0.99167 0.95383 0.86678 0.79602 0.83223 0.78620 1.20265 1.21290 1.20276 1.21231 0.93005 0.91129 1.50466 0.92816 1.19111 0.93954 0.91214 0.97249 1.21594 0.98987 0.92540 1.00641 1.20812 0.96057 0.92525 1.02874 1.20088 0.93677 0.93653 0.90664 1.21795 1.02804 0.99891 0.98738 1.22348 0.92674 0.93558 0.93983 1.66433 1.28319 1.31765 0.96456 1.18409 0.96083 0.94710 0.85874 1.41498 1.41725 1.32830 1.03354 0.74794 1.21801 0.97330 0.93043 0.95745 1.21773 1.04798 1.03143 0.90821 1.19756 1.02072 0.99559 0.94552 0.92989 0.96560 0.96538 0.93317 0.93157 0.90890 0.90945 0.84622 0.82605 0.80748 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.09 5.13 -26.73 -0.14 -2.23 16 11 C -0.09 -1.49 5.34 -27.89 -0.15 -1.64 16 12 C 0.03 0.45 5.19 -104.09 -0.54 -0.09 16 13 C -0.21 -3.04 9.79 -39.44 -0.39 -3.43 16 14 C 0.14 1.90 11.14 -17.50 -0.20 1.70 16 15 N -0.52 -7.92 10.39 -12.27 -0.13 -8.05 16 16 C 0.28 4.33 8.43 -155.69 -1.31 3.02 16 17 N -0.59 -6.89 6.05 -12.14 -0.07 -6.97 16 18 H 0.42 3.58 8.96 -40.82 -0.37 3.22 16 19 C 0.05 0.50 11.82 -16.69 -0.20 0.30 16 20 C -0.18 -2.51 10.99 -37.72 -0.41 -2.93 16 21 C -0.15 -2.47 6.18 -105.11 -0.65 -3.12 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.15 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 280.17 15.07 4.22 4.22 Total: -1.00 -33.06 280.17 -8.93 -41.99 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.13 Total: -0.06 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -4.53 Total: -21.64 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.54 Total: -41.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.06 -8.93 -41.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.991 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds