Wall clock time and date at job start Sun Mar 29 2020 21:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.38239 * 120.98341 * 264.72216 * 12 11 10 14 14 C 1.38626 * 119.41495 * 179.81327 * 13 12 11 15 15 N 1.31609 * 121.58021 * 0.45577 * 14 13 12 16 16 C 1.32622 * 121.67319 * 359.77625 * 15 14 13 17 17 N 1.37434 * 133.19477 * 179.97438 * 16 15 14 18 18 H 0.96997 * 124.98440 * 359.97438 * 17 16 15 19 19 C 1.36917 * 110.02342 * 180.02562 * 17 16 15 20 20 C 1.34227 * 109.92263 * 0.02562 * 19 17 16 21 21 C 1.39655 * 120.97818 * 84.99721 * 12 11 10 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08001 * 120.28569 * 359.97438 * 13 12 11 30 30 H 1.07996 * 119.20493 * 180.25978 * 14 13 12 31 31 H 1.08005 * 125.03523 * 180.02562 * 19 17 16 32 32 H 1.08003 * 126.56354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4597 -6.1325 0.0024 13 6 2.8392 -6.7447 -1.1775 14 6 3.7453 -7.7932 -1.1397 15 7 4.2489 -8.2283 -0.0044 16 6 3.9182 -7.6831 1.1585 17 7 4.2879 -7.9400 2.4570 18 1 4.9098 -8.6319 2.7316 19 6 3.6486 -7.0768 3.3060 20 6 2.8586 -6.2477 2.6058 21 6 3.0062 -6.6106 1.1953 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 0.8541 -5.0447 0.8922 28 1 0.8534 -5.0451 -0.8877 29 1 2.4353 -6.4073 -2.1206 30 1 4.0427 -8.2662 -2.0639 31 1 3.7631 -7.0648 4.3799 32 1 2.2345 -5.4625 3.0064 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:42 Heat of formation + Delta-G solvation = 27.622269 kcal Electronic energy + Delta-G solvation = -14929.428835 eV Core-core repulsion = 12467.795856 eV Total energy + Delta-G solvation = -2461.632980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.39777 -38.84831 -36.78526 -34.94017 -32.86542 -31.02351 -30.25428 -28.67221 -25.71963 -23.59821 -23.33903 -22.00191 -21.25374 -18.95665 -18.34282 -17.46144 -16.69496 -16.47130 -16.02626 -15.94209 -15.22081 -14.56304 -14.21650 -14.04652 -13.98174 -13.53227 -13.20022 -13.17340 -12.83616 -12.59671 -12.44845 -12.40631 -11.49897 -11.43736 -11.30177 -10.82678 -10.53212 -10.31807 -9.36426 -8.89985 -8.18215 -6.29337 0.08040 0.46277 1.40598 1.43541 1.51622 1.81381 1.93936 2.42314 2.94596 3.14492 3.60038 3.86160 3.96454 3.98445 4.20751 4.42647 4.52236 4.56898 4.69712 4.82139 4.86798 5.01268 5.02519 5.20889 5.25107 5.48197 5.53272 5.60257 5.64541 5.79825 5.87499 6.05953 6.27577 6.49325 6.86752 7.10900 7.39561 8.93151 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036449 B = 0.005270 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.006502 B = 5311.995419 C = 5626.745280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.072 4.072 12 C -0.001 4.001 13 C -0.209 4.209 14 C 0.134 3.866 15 N -0.525 5.525 16 C 0.258 3.742 17 N -0.575 5.575 18 H 0.431 0.569 19 C 0.081 3.919 20 C -0.225 4.225 21 C -0.175 4.175 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.006 1.006 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.193 0.807 31 H 0.224 0.776 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -16.132 3.898 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.109 4.109 12 C -0.009 4.009 13 C -0.231 4.231 14 C -0.031 4.031 15 N -0.239 5.239 16 C 0.025 3.975 17 N -0.184 5.184 18 H 0.271 0.729 19 C -0.045 4.045 20 C -0.250 4.250 21 C -0.182 4.182 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.013 0.987 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.171 0.829 30 H 0.209 0.791 31 H 0.240 0.760 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.026 -16.808 4.043 19.059 hybrid contribution -0.274 1.446 0.028 1.472 sum 7.752 -15.362 4.071 17.682 Atomic orbital electron populations 1.70079 1.07700 1.27832 1.51584 1.25939 0.95759 1.03184 0.94684 0.85541 0.78345 0.78280 0.79131 1.19282 1.20599 1.19278 1.21661 0.93382 0.92583 1.50728 0.92651 1.19010 0.94312 0.92703 0.95090 1.21310 0.97802 0.92757 1.00146 1.20562 0.96049 0.91387 1.02947 1.20042 0.94639 0.94261 0.91958 1.22067 1.02501 0.99727 0.98778 1.22930 0.92041 0.93237 0.94851 1.66523 1.28517 1.31939 0.96926 1.18702 0.96696 0.95049 0.87061 1.41603 1.41490 1.33019 1.02259 0.72870 1.22494 0.94211 0.90376 0.97393 1.21919 1.07382 1.05209 0.90522 1.20102 1.02452 1.00171 0.95445 0.92722 0.98610 0.98728 0.93463 0.93777 0.91299 0.90429 0.82927 0.79058 0.75964 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.55 5.13 30.59 0.16 -3.39 16 11 C -0.07 -2.58 5.34 29.85 0.16 -2.42 16 12 C 0.00 -0.02 5.19 -19.52 -0.10 -0.12 16 13 C -0.21 -5.85 9.79 22.36 0.22 -5.63 16 14 C 0.13 3.43 11.14 84.82 0.95 4.37 16 15 N -0.52 -15.33 10.39 -192.74 -2.00 -17.34 16 16 C 0.26 7.60 8.43 133.94 1.13 8.73 16 17 N -0.58 -12.17 6.05 -192.31 -1.16 -13.34 16 18 H 0.43 6.21 8.96 -92.71 -0.83 5.38 16 19 C 0.08 1.56 11.82 82.98 0.98 2.54 16 20 C -0.23 -6.17 10.99 23.48 0.26 -5.91 16 21 C -0.17 -5.61 6.18 -20.18 -0.12 -5.73 16 22 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 28 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 29 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 30 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -72.09 280.17 3.90 -68.20 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.29 Total: 9.52 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 4.47 Total: -36.98 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.88 Total: -87.48 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.09 3.90 -68.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.818 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds