Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.38259 * 120.00036 * 269.72518 * 12 11 10 14 14 C 1.38212 * 119.99909 * 179.78676 * 13 12 11 15 15 C 1.38254 * 120.00196 * 0.46725 * 14 13 12 16 16 C 1.38213 * 119.99755 * 359.76689 * 15 14 13 17 17 C 1.50703 * 120.00094 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49845 * 8.64497 * 17 16 15 19 19 C 1.53003 * 60.00047 * 252.51069 * 18 17 16 20 20 C 1.38214 * 120.00023 * 90.00339 * 12 11 10 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 26 26 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 27 27 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 28 28 H 1.07998 * 120.00008 * 0.02562 * 13 12 11 29 29 H 1.08005 * 120.00401 * 180.25420 * 14 13 12 30 30 H 1.08003 * 120.00368 * 179.78649 * 15 14 13 31 31 H 1.09002 * 115.55002 * 154.35394 * 17 16 15 32 32 H 1.09004 * 117.49542 * 359.97438 * 18 17 16 33 33 H 1.08993 * 117.49962 * 145.02123 * 18 17 16 34 34 H 1.08998 * 117.50148 * 252.51506 * 19 18 17 35 35 H 1.09001 * 117.51925 * 107.47399 * 19 18 17 36 36 H 1.07993 * 119.99666 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9044 -6.6612 -1.1999 14 6 3.8059 -7.7089 -1.2002 15 6 4.2554 -8.2345 -0.0031 16 6 3.8069 -7.7091 1.1940 17 6 4.2964 -8.2824 2.4989 18 6 5.4354 -9.3023 2.4395 19 6 4.0140 -9.7613 2.7710 20 6 2.9085 -6.6583 1.1944 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.8725 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 0.8532 -5.0450 0.8876 27 1 0.8540 -5.0446 -0.8922 28 1 2.5505 -6.2531 -2.1350 29 1 4.1567 -8.1192 -2.1357 30 1 4.9572 -9.0554 -0.0034 31 1 4.2744 -7.6010 3.3495 32 1 5.8303 -9.5589 1.4565 33 1 6.1630 -9.2920 3.2509 34 1 3.8065 -10.0529 3.8006 35 1 3.4737 -10.3194 2.0063 36 1 2.5578 -6.2479 2.1298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = 18.891869 kcal Electronic energy + Delta-G solvation = -14821.703680 eV Core-core repulsion = 12463.232466 eV Total energy + Delta-G solvation = -2358.471215 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65140 -37.04308 -34.52634 -32.52915 -30.69313 -30.11361 -26.69519 -23.97158 -23.32558 -22.56522 -21.72397 -20.24436 -19.30616 -16.88818 -16.16743 -15.83929 -15.01533 -14.54427 -14.39975 -14.01489 -13.42826 -13.07067 -12.98612 -12.29659 -12.13127 -11.90086 -11.66696 -11.32311 -11.09227 -10.94259 -10.81197 -10.66999 -10.53323 -10.49860 -10.33002 -9.63571 -9.32451 -9.06482 -8.51782 -8.32053 -8.25511 -5.97088 -3.99077 1.48931 1.59171 3.32846 3.40165 3.44916 3.60065 4.09216 4.46665 4.49212 4.73624 4.86076 4.96950 5.10908 5.22279 5.31392 5.38686 5.46044 5.59517 5.66641 5.67734 5.88038 5.91707 5.96489 6.11448 6.16285 6.24738 6.48415 6.62571 6.65618 6.73071 6.95165 7.01301 7.14649 7.23910 7.71936 7.86658 8.03800 8.47006 9.08473 9.64906 11.14290 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.040256 B = 0.004274 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.376632 B = 6549.175513 C = 6759.146206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.086 4.086 12 C -0.060 4.060 13 C -0.124 4.124 14 C -0.116 4.116 15 C -0.137 4.137 16 C -0.054 4.054 17 C -0.114 4.114 18 C -0.179 4.179 19 C -0.171 4.171 20 C -0.113 4.113 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -18.525 2.284 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.060 4.060 13 C -0.142 4.142 14 C -0.134 4.134 15 C -0.155 4.155 16 C -0.054 4.054 17 C -0.132 4.132 18 C -0.215 4.215 19 C -0.208 4.208 20 C -0.131 4.131 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.473 -18.407 2.286 19.997 hybrid contribution 0.447 1.006 -0.015 1.101 sum 7.919 -17.401 2.270 19.252 Atomic orbital electron populations 1.69983 1.06039 1.26404 1.51182 1.25028 0.94844 0.99232 0.95418 0.86555 0.80159 0.83863 0.77558 1.19745 1.21021 1.21026 1.21318 0.93093 0.91134 1.50144 0.92684 1.19134 0.94033 0.91370 0.97210 1.21614 0.98951 0.92913 1.00489 1.20807 0.96155 0.92864 1.02476 1.20185 0.97126 0.95960 0.92685 1.21095 0.98304 0.96871 0.97944 1.21047 0.97777 0.97034 0.97571 1.20890 1.01413 1.01102 0.92102 1.19061 0.97158 0.96288 0.92861 1.21042 1.03096 0.92114 0.96942 1.23049 0.91599 1.03688 1.03204 1.23006 0.98966 0.96266 1.02566 1.20871 0.97826 0.96386 0.98043 0.93113 0.96597 0.96590 0.93345 0.93353 0.91421 0.91400 0.86114 0.86459 0.86591 0.86991 0.88435 0.88598 0.88610 0.88684 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.17 5.13 -26.73 -0.14 -2.31 16 11 C -0.09 -1.51 5.35 -27.88 -0.15 -1.66 16 12 C -0.06 -0.95 5.13 -104.62 -0.54 -1.48 16 13 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 14 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 15 C -0.14 -1.71 9.30 -39.58 -0.37 -2.08 16 16 C -0.05 -0.71 5.61 -104.62 -0.59 -1.29 16 17 C -0.11 -1.23 6.04 -91.77 -0.55 -1.79 16 18 C -0.18 -1.59 9.86 -26.73 -0.26 -1.85 16 19 C -0.17 -1.54 10.16 -26.73 -0.27 -1.81 16 20 C -0.11 -1.68 9.39 -39.58 -0.37 -2.05 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.16 8.09 -51.93 -0.42 0.75 16 27 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 28 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.12 1.19 6.02 -52.48 -0.32 0.87 16 31 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.10 0.83 6.18 -51.93 -0.32 0.51 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -30.74 303.14 -9.96 -40.69 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.67 Total: -1.79 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -4.57 Total: -33.84 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.59 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.74 -9.96 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.584 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds