Wall clock time and date at job start Sun Mar 29 2020 21:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99792 * 2 1 4 4 H 1.48508 * 109.47218 * 240.00076 * 3 2 1 5 5 H 1.48501 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47231 * 119.99739 * 3 2 1 7 7 C 1.37874 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99672 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47079 * 180.02562 * 11 10 9 13 13 C 1.36498 * 120.17969 * 264.97859 * 12 11 10 14 14 C 1.38929 * 120.62952 * 180.02562 * 13 12 11 15 15 C 1.36629 * 120.81149 * 0.03509 * 14 13 12 16 16 C 1.39250 * 119.85100 * 359.97312 * 15 14 13 17 17 N 1.37047 * 133.84924 * 180.02562 * 16 15 14 18 18 H 0.96997 * 125.46498 * 359.96879 * 17 16 15 19 19 N 1.39874 * 109.07486 * 179.97438 * 17 16 15 20 20 C 1.30244 * 110.09300 * 0.02562 * 19 17 16 21 21 C 1.39904 * 120.18281 * 85.00021 * 12 11 10 22 22 H 0.96997 * 120.00338 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47447 * 60.00231 * 9 7 2 24 24 H 1.09000 * 109.47229 * 299.99717 * 9 7 2 25 25 H 1.09000 * 109.46910 * 59.99795 * 10 9 7 26 26 H 1.09000 * 109.46801 * 299.99871 * 10 9 7 27 27 H 1.09000 * 109.47514 * 59.99993 * 11 10 9 28 28 H 1.09005 * 109.47436 * 299.99701 * 11 10 9 29 29 H 1.08002 * 119.68835 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.59503 * 180.02562 * 14 13 12 31 31 H 1.07996 * 120.07565 * 179.97438 * 15 14 13 32 32 H 1.07997 * 126.10312 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0031 13 6 2.8289 -6.7216 -1.1716 14 6 3.7306 -7.7785 -1.1806 15 6 4.2664 -8.2513 -0.0161 16 6 3.9083 -7.6703 1.1977 17 7 4.2572 -7.9049 2.5021 18 1 4.8751 -8.5885 2.8052 19 7 3.5795 -7.0006 3.3263 20 6 2.8278 -6.2167 2.6074 21 6 2.9951 -6.5981 1.2088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8713 -3.6039 0.8923 26 1 2.8726 -3.6047 -0.8877 27 1 0.8547 -5.0450 -0.8895 28 1 0.8527 -5.0448 0.8905 29 1 2.4162 -6.3627 -2.1029 30 1 4.0114 -8.2320 -2.1197 31 1 4.9659 -9.0738 -0.0369 32 1 2.1943 -5.4253 2.9799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:41 Heat of formation + Delta-G solvation = 59.819667 kcal Electronic energy + Delta-G solvation = -14915.784960 eV Core-core repulsion = 12455.548164 eV Total energy + Delta-G solvation = -2460.236796 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16149 -37.42881 -34.77709 -32.87269 -31.40569 -29.81708 -29.37847 -26.68546 -23.71195 -22.44051 -21.86874 -20.98003 -20.02473 -17.32992 -16.61086 -16.11618 -15.24138 -14.83981 -14.74117 -14.45136 -13.81666 -13.35673 -13.24336 -12.50021 -12.14197 -11.89621 -11.54614 -11.20119 -11.06226 -10.82501 -10.72355 -10.67495 -10.42947 -10.03182 -9.63948 -9.27657 -9.05946 -8.51940 -8.31103 -7.81150 -5.96609 -3.98654 1.04056 1.62840 2.59613 2.76478 3.35954 3.40128 3.42986 3.89090 4.49133 4.66773 4.75986 4.91776 5.05091 5.36683 5.39162 5.41670 5.63671 5.85494 5.93990 6.01724 6.10525 6.39528 6.44133 6.54280 6.60445 6.92288 6.94160 6.98005 7.17447 7.32856 7.64152 7.71520 7.86287 8.03951 8.46959 9.08396 9.65283 11.14618 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036012 B = 0.005295 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.335629 B = 5286.481746 C = 5607.835343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.101 4.101 11 C -0.089 4.089 12 C 0.019 3.981 13 C -0.169 4.169 14 C -0.061 4.061 15 C -0.163 4.163 16 C 0.128 3.872 17 N -0.518 5.518 18 H 0.435 0.565 19 N -0.262 5.262 20 C 0.090 3.910 21 C -0.178 4.178 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 -16.442 0.262 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.126 4.126 12 C 0.016 3.984 13 C -0.188 4.188 14 C -0.082 4.082 15 C -0.185 4.185 16 C 0.013 3.987 17 N -0.233 5.233 18 H 0.279 0.721 19 N -0.075 5.075 20 C -0.108 4.108 21 C -0.185 4.185 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.540 -16.613 1.481 17.916 hybrid contribution 0.615 0.765 -0.643 1.173 sum 7.155 -15.849 0.837 17.409 Atomic orbital electron populations 1.69950 1.06018 1.26646 1.50960 1.25008 0.94825 0.99163 0.95388 0.86684 0.79607 0.83251 0.78614 1.20283 1.21307 1.20272 1.21233 0.93008 0.91148 1.50460 0.92816 1.19119 0.93973 0.91237 0.97265 1.21611 0.98970 0.92647 1.00656 1.20862 0.96185 0.92724 1.02872 1.19485 0.94293 0.94078 0.90531 1.20618 1.01626 0.98701 0.97874 1.20687 0.94985 0.95400 0.97111 1.19683 1.05647 1.03649 0.89501 1.18836 0.96692 0.96642 0.86548 1.45910 1.42501 1.32771 1.02096 0.72087 1.76565 1.09216 1.02913 1.18762 1.25206 0.97515 0.98126 0.89996 1.19775 1.04193 1.00546 0.94016 0.92994 0.96555 0.96527 0.93241 0.93245 0.90950 0.91064 0.85533 0.85646 0.86229 0.78471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.05 5.14 -26.73 -0.14 -2.19 16 11 C -0.09 -1.48 5.27 -27.89 -0.15 -1.62 16 12 C 0.02 0.28 5.13 -104.63 -0.54 -0.25 16 13 C -0.17 -2.26 9.60 -39.95 -0.38 -2.65 16 14 C -0.06 -0.70 9.96 -39.91 -0.40 -1.10 16 15 C -0.16 -1.89 10.03 -39.79 -0.40 -2.29 16 16 C 0.13 1.76 7.34 -84.17 -0.62 1.14 16 17 N -0.52 -6.56 7.37 32.36 0.24 -6.32 16 18 H 0.44 3.99 8.96 -182.77 -1.64 2.35 16 19 N -0.26 -3.83 12.55 31.87 0.40 -3.43 16 20 C 0.09 1.32 12.08 -15.15 -0.18 1.13 16 21 C -0.18 -2.71 6.14 -105.21 -0.65 -3.36 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 29 H 0.13 1.53 8.05 -52.49 -0.42 1.11 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.20 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 280.19 15.07 4.22 4.22 Total: -1.00 -31.88 280.19 -8.82 -40.70 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.40 Total: -1.44 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -4.00 Total: -24.30 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 1.37 Total: -35.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.88 -8.82 -40.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.519 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds