Wall clock time and date at job start Sun Mar 29 2020 21:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99792 * 2 1 4 4 H 1.48508 * 109.47218 * 240.00076 * 3 2 1 5 5 H 1.48501 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47231 * 119.99739 * 3 2 1 7 7 C 1.37874 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99672 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47079 * 180.02562 * 11 10 9 13 13 C 1.36498 * 120.17969 * 264.97859 * 12 11 10 14 14 C 1.38929 * 120.62952 * 180.02562 * 13 12 11 15 15 C 1.36629 * 120.81149 * 0.03509 * 14 13 12 16 16 C 1.39250 * 119.85100 * 359.97312 * 15 14 13 17 17 N 1.37047 * 133.84924 * 180.02562 * 16 15 14 18 18 H 0.96997 * 125.46498 * 359.96879 * 17 16 15 19 19 N 1.39874 * 109.07486 * 179.97438 * 17 16 15 20 20 C 1.30244 * 110.09300 * 0.02562 * 19 17 16 21 21 C 1.39904 * 120.18281 * 85.00021 * 12 11 10 22 22 H 0.96997 * 120.00338 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47447 * 60.00231 * 9 7 2 24 24 H 1.09000 * 109.47229 * 299.99717 * 9 7 2 25 25 H 1.09000 * 109.46910 * 59.99795 * 10 9 7 26 26 H 1.09000 * 109.46801 * 299.99871 * 10 9 7 27 27 H 1.09000 * 109.47514 * 59.99993 * 11 10 9 28 28 H 1.09005 * 109.47436 * 299.99701 * 11 10 9 29 29 H 1.08002 * 119.68835 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.59503 * 180.02562 * 14 13 12 31 31 H 1.07996 * 120.07565 * 179.97438 * 15 14 13 32 32 H 1.07997 * 126.10312 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0031 13 6 2.8289 -6.7216 -1.1716 14 6 3.7306 -7.7785 -1.1806 15 6 4.2664 -8.2513 -0.0161 16 6 3.9083 -7.6703 1.1977 17 7 4.2572 -7.9049 2.5021 18 1 4.8751 -8.5885 2.8052 19 7 3.5795 -7.0006 3.3263 20 6 2.8278 -6.2167 2.6074 21 6 2.9951 -6.5981 1.2088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8713 -3.6039 0.8923 26 1 2.8726 -3.6047 -0.8877 27 1 0.8547 -5.0450 -0.8895 28 1 0.8527 -5.0448 0.8905 29 1 2.4162 -6.3627 -2.1029 30 1 4.0114 -8.2320 -2.1197 31 1 4.9659 -9.0738 -0.0369 32 1 2.1943 -5.4253 2.9799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:41 Heat of formation + Delta-G solvation = 41.175955 kcal Electronic energy + Delta-G solvation = -14916.593412 eV Core-core repulsion = 12455.548164 eV Total energy + Delta-G solvation = -2461.045248 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19115 -38.50764 -36.35414 -34.63850 -32.83473 -31.11026 -30.46028 -28.32970 -25.41709 -23.52954 -22.98408 -22.32832 -21.56640 -18.62212 -18.09875 -17.57532 -16.51884 -16.32438 -15.91309 -15.77715 -15.15884 -14.72614 -14.45350 -14.20468 -13.84035 -13.13551 -12.91821 -12.79292 -12.53687 -12.44138 -12.31015 -12.03965 -11.86516 -11.42102 -11.26594 -11.22084 -10.88656 -10.51075 -9.56510 -8.84174 -8.16514 -6.27153 0.01628 0.60760 1.41463 1.44082 1.51990 1.53151 1.82753 2.43412 2.86854 3.16323 3.62162 3.74165 3.92077 4.08791 4.32513 4.37975 4.48755 4.61205 4.73315 4.76185 4.98874 5.09089 5.13673 5.26175 5.31745 5.42902 5.56905 5.58940 5.73119 5.87101 5.90264 5.99401 6.30425 6.42344 6.62775 6.89662 7.41671 8.94683 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036012 B = 0.005295 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.335629 B = 5286.481746 C = 5607.835343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.084 4.084 11 C -0.078 4.078 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.059 4.059 15 C -0.153 4.153 16 C 0.117 3.883 17 N -0.508 5.508 18 H 0.450 0.550 19 N -0.277 5.277 20 C 0.073 3.927 21 C -0.201 4.201 22 H 0.263 0.737 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -17.522 -0.524 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.122 4.122 11 C -0.115 4.115 12 C -0.008 4.008 13 C -0.190 4.190 14 C -0.079 4.079 15 C -0.175 4.175 16 C 0.001 3.999 17 N -0.225 5.225 18 H 0.297 0.703 19 N -0.090 5.090 20 C -0.124 4.124 21 C -0.209 4.209 22 H 0.072 0.928 23 H 0.014 0.986 24 H 0.013 0.987 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.291 -17.716 0.703 19.572 hybrid contribution 0.090 1.018 -0.422 1.106 sum 8.381 -16.698 0.281 18.685 Atomic orbital electron populations 1.70079 1.07657 1.27750 1.51731 1.25921 0.95738 1.03115 0.94809 0.85571 0.78359 0.78457 0.79089 1.19244 1.20710 1.19416 1.21685 0.93404 0.92658 1.50476 0.92638 1.19031 0.94398 0.92742 0.95117 1.21340 0.97763 0.92863 1.00253 1.20632 0.96271 0.91582 1.03022 1.19335 0.95281 0.94654 0.91540 1.20903 1.01598 0.98958 0.97521 1.21091 0.93751 0.94400 0.98695 1.20144 1.05186 1.03718 0.88434 1.19149 0.96669 0.96590 0.87475 1.45907 1.42277 1.32594 1.01730 0.70341 1.76490 1.09587 1.03436 1.19517 1.25395 0.98041 0.98660 0.90310 1.19980 1.05220 1.01639 0.94065 0.92791 0.98647 0.98654 0.93695 0.93386 0.90592 0.91206 0.84539 0.81990 0.82770 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.08 -3.50 5.14 30.59 0.16 -3.34 16 11 C -0.08 -2.61 5.27 29.85 0.16 -2.45 16 12 C -0.01 -0.17 5.13 -19.87 -0.10 -0.27 16 13 C -0.17 -4.22 9.60 22.03 0.21 -4.01 16 14 C -0.06 -1.14 9.96 22.06 0.22 -0.92 16 15 C -0.15 -3.01 10.03 22.14 0.22 -2.78 16 16 C 0.12 2.99 7.34 39.21 0.29 3.27 16 17 N -0.51 -12.07 7.37 -51.53 -0.38 -12.45 16 18 H 0.45 7.33 8.96 -213.47 -1.91 5.42 16 19 N -0.28 -7.99 12.55 -53.09 -0.67 -8.65 16 20 C 0.07 2.17 12.08 86.92 1.05 3.22 16 21 C -0.20 -6.02 6.14 -20.25 -0.12 -6.15 16 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 28 H 0.07 2.31 8.05 -2.38 -0.02 2.29 16 29 H 0.14 3.02 8.05 -2.91 -0.02 3.00 16 30 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.20 5.42 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -68.66 280.19 3.39 -65.27 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -0.80 Total: 8.32 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 2.92 Total: -42.57 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -0.76 Total: -77.71 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.66 3.39 -65.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.442 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds