Wall clock time and date at job start Sun Mar 29 2020 21:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.39679 * 119.09522 * 269.73246 * 12 11 10 14 14 C 1.35648 * 121.73087 * 179.71671 * 13 12 11 15 15 C 1.41133 * 119.53262 * 0.52747 * 14 13 12 16 16 C 1.38242 * 134.81726 * 179.76302 * 15 14 13 17 17 N 1.33990 * 107.90682 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.02173 * 179.97438 * 17 16 15 19 19 N 1.39951 * 109.95436 * 359.97438 * 17 16 15 20 20 C 1.32055 * 108.96324 * 0.02562 * 19 17 16 21 21 C 1.35640 * 119.09075 * 89.99722 * 12 11 10 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08002 * 119.13330 * 359.97438 * 13 12 11 30 30 H 1.07994 * 120.23816 * 180.28348 * 14 13 12 31 31 H 1.08003 * 126.04492 * 0.02562 * 16 15 14 32 32 H 1.08005 * 120.20022 * 359.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 6 2.8968 -6.6531 -1.2184 14 6 3.7814 -7.6796 -1.2803 15 6 4.2699 -8.2498 -0.0853 16 6 5.1469 -9.2746 0.2180 17 7 5.2272 -9.3668 1.5523 18 1 5.7744 -10.0065 2.0341 19 7 4.4048 -8.4037 2.1479 20 6 3.8061 -7.7054 1.2004 21 6 2.8882 -6.6331 1.1874 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 2.5237 -6.2244 -2.1368 30 1 4.1066 -8.0604 -2.2371 31 1 5.6746 -9.8912 -0.4946 32 1 2.5301 -6.2131 2.1157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:27 Heat of formation + Delta-G solvation = 68.502787 kcal Electronic energy + Delta-G solvation = -14635.399098 eV Core-core repulsion = 12175.538831 eV Total energy + Delta-G solvation = -2459.860267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20007 -37.71501 -34.30687 -32.44983 -32.01009 -30.23503 -28.72503 -26.99764 -24.21278 -22.70494 -21.07613 -20.61663 -19.92485 -18.07169 -16.63243 -16.18933 -15.26984 -14.87358 -14.72437 -14.41147 -13.84961 -13.34885 -12.93580 -12.55239 -12.22403 -11.79679 -11.41978 -11.30736 -11.16414 -10.72463 -10.55515 -10.43546 -10.28359 -10.22267 -9.58464 -9.28620 -9.04015 -8.39124 -8.28440 -7.54162 -5.93770 -3.95547 0.68469 1.93761 2.49404 2.65467 3.36323 3.42321 3.46424 3.98449 4.30485 4.51693 4.58224 5.06913 5.22393 5.31171 5.41945 5.46067 5.72430 5.78436 5.91937 6.17719 6.27899 6.48234 6.54759 6.60434 6.70743 6.98120 7.00028 7.03706 7.06496 7.23209 7.61763 7.75698 7.91079 8.07441 8.50640 9.11861 9.68181 11.17594 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049346 B = 0.004358 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.285747 B = 6423.694215 C = 6537.611017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.088 4.088 12 C -0.021 4.021 13 C -0.136 4.136 14 C -0.055 4.055 15 C -0.209 4.209 16 C 0.073 3.927 17 N -0.433 5.433 18 H 0.440 0.560 19 N -0.314 5.314 20 C 0.113 3.887 21 C -0.117 4.117 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.184 0.816 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 -19.505 -1.530 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.125 4.125 12 C -0.026 4.026 13 C -0.156 4.156 14 C -0.076 4.076 15 C -0.219 4.219 16 C -0.083 4.083 17 N -0.134 5.134 18 H 0.284 0.716 19 N -0.143 5.143 20 C -0.040 4.040 21 C -0.138 4.138 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.201 0.799 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.871 -19.544 -0.210 21.464 hybrid contribution 0.761 0.654 -0.640 1.190 sum 9.631 -18.890 -0.850 21.221 Atomic orbital electron populations 1.69963 1.06029 1.26490 1.51150 1.25018 0.94827 0.99179 0.95450 0.86620 0.79894 0.83598 0.78055 1.20706 1.21265 1.19902 1.21288 0.93067 0.91160 1.50186 0.92734 1.19130 0.94037 0.91314 0.97248 1.21624 0.98979 0.92795 1.00632 1.20887 0.96143 0.92733 1.02756 1.19711 0.95764 0.94997 0.92130 1.20589 0.99478 0.97714 0.97799 1.20175 0.96285 0.95785 0.95305 1.19671 1.05355 1.01642 0.95263 1.22611 0.99919 0.99422 0.86379 1.46277 1.34533 1.27610 1.04931 0.71632 1.77673 1.12508 1.05661 1.18430 1.20985 0.96544 0.96059 0.90442 1.19747 0.99243 0.96158 0.98636 0.93078 0.96559 0.96540 0.93227 0.93238 0.91190 0.91098 0.85777 0.86083 0.79875 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.16 5.13 -26.73 -0.14 -2.30 16 11 C -0.09 -1.52 5.29 -27.89 -0.15 -1.67 16 12 C -0.02 -0.34 5.09 -105.02 -0.53 -0.88 16 13 C -0.14 -1.91 9.51 -39.97 -0.38 -2.29 16 14 C -0.06 -0.68 10.09 -39.41 -0.40 -1.08 16 15 C -0.21 -2.73 6.33 -105.19 -0.67 -3.39 16 16 C 0.07 0.67 12.07 -16.61 -0.20 0.47 16 17 N -0.43 -4.25 7.18 30.84 0.22 -4.03 16 18 H 0.44 2.44 8.96 -182.71 -1.64 0.80 16 19 N -0.31 -4.64 12.70 33.25 0.42 -4.21 16 20 C 0.11 1.77 7.49 -83.06 -0.62 1.15 16 21 C -0.12 -1.89 9.65 -39.41 -0.38 -2.27 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 28 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.13 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 280.18 15.07 4.22 4.22 Total: -1.00 -34.10 280.18 -8.83 -42.94 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.40 Total: -3.67 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -4.02 Total: -25.65 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 1.38 Total: -34.84 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.10 -8.83 -42.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.438 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds