Wall clock time and date at job start Sun Mar 29 2020 21:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.39679 * 119.09522 * 269.73246 * 12 11 10 14 14 C 1.35648 * 121.73087 * 179.71671 * 13 12 11 15 15 C 1.41133 * 119.53262 * 0.52747 * 14 13 12 16 16 C 1.38242 * 134.81726 * 179.76302 * 15 14 13 17 17 N 1.33990 * 107.90682 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.02173 * 179.97438 * 17 16 15 19 19 N 1.39951 * 109.95436 * 359.97438 * 17 16 15 20 20 C 1.32055 * 108.96324 * 0.02562 * 19 17 16 21 21 C 1.35640 * 119.09075 * 89.99722 * 12 11 10 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08002 * 119.13330 * 359.97438 * 13 12 11 30 30 H 1.07994 * 120.23816 * 180.28348 * 14 13 12 31 31 H 1.08003 * 126.04492 * 0.02562 * 16 15 14 32 32 H 1.08005 * 120.20022 * 359.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 6 2.8968 -6.6531 -1.2184 14 6 3.7814 -7.6796 -1.2803 15 6 4.2699 -8.2498 -0.0853 16 6 5.1469 -9.2746 0.2180 17 7 5.2272 -9.3668 1.5523 18 1 5.7744 -10.0065 2.0341 19 7 4.4048 -8.4037 2.1479 20 6 3.8061 -7.7054 1.2004 21 6 2.8882 -6.6331 1.1874 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 2.5237 -6.2244 -2.1368 30 1 4.1066 -8.0604 -2.2371 31 1 5.6746 -9.8912 -0.4946 32 1 2.5301 -6.2131 2.1157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:27 Heat of formation + Delta-G solvation = 46.993578 kcal Electronic energy + Delta-G solvation = -14636.331808 eV Core-core repulsion = 12175.538831 eV Total energy + Delta-G solvation = -2460.792977 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.12655 -38.84152 -36.08161 -34.25794 -33.02341 -31.71755 -29.69484 -28.67443 -25.85383 -23.97126 -22.45194 -21.66390 -21.45785 -18.93895 -18.44507 -17.56113 -16.58067 -16.25783 -16.02929 -15.79326 -14.94081 -14.76708 -14.47915 -14.18429 -13.69538 -13.08248 -12.93354 -12.84547 -12.69258 -12.47929 -12.26514 -12.13043 -11.46018 -11.31864 -11.26121 -11.19375 -11.04553 -10.52933 -9.49147 -8.54430 -8.17808 -6.28910 -0.24664 0.89333 1.40542 1.42347 1.53448 1.54185 1.93427 2.42731 2.91888 3.14802 3.36535 3.78049 4.06522 4.19363 4.37917 4.38556 4.58525 4.62354 4.70865 4.73837 4.88485 5.05652 5.24387 5.25620 5.32906 5.51893 5.55975 5.62359 5.75627 5.88538 5.90746 6.03430 6.28821 6.35580 6.66002 6.87812 7.39991 8.93911 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049346 B = 0.004358 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.285747 B = 6423.694215 C = 6537.611017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.079 4.079 12 C -0.022 4.022 13 C -0.173 4.173 14 C -0.026 4.026 15 C -0.246 4.246 16 C 0.121 3.879 17 N -0.417 5.417 18 H 0.459 0.541 19 N -0.362 5.362 20 C 0.086 3.914 21 C -0.146 4.146 22 H 0.264 0.736 23 H -0.003 1.003 24 H -0.009 1.009 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.163 0.837 31 H 0.246 0.754 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.398 -21.210 -2.973 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.125 4.125 11 C -0.116 4.116 12 C -0.027 4.027 13 C -0.193 4.193 14 C -0.046 4.046 15 C -0.255 4.255 16 C -0.038 4.038 17 N -0.119 5.119 18 H 0.307 0.693 19 N -0.192 5.192 20 C -0.066 4.066 21 C -0.168 4.168 22 H 0.073 0.927 23 H 0.016 0.984 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.152 0.848 30 H 0.180 0.820 31 H 0.262 0.738 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.395 -21.269 -1.625 24.184 hybrid contribution 0.067 1.009 -0.184 1.028 sum 11.462 -20.259 -1.809 23.347 Atomic orbital electron populations 1.70093 1.07749 1.27754 1.51752 1.25973 0.95786 1.03297 0.94724 0.85458 0.78582 0.78466 0.78612 1.19490 1.20618 1.19033 1.21720 0.93467 0.92598 1.50500 0.92515 1.19045 0.94437 0.92913 0.95029 1.21370 0.97840 0.92933 1.00321 1.20699 0.96306 0.91775 1.02816 1.19551 0.95442 0.94487 0.93194 1.20692 1.01748 0.99712 0.97106 1.20588 0.93605 0.93603 0.96785 1.20123 1.07357 1.03550 0.94491 1.23540 0.96694 0.97044 0.86478 1.46368 1.33255 1.26561 1.05679 0.69300 1.77599 1.14560 1.07591 1.19471 1.21071 0.96866 0.96258 0.92368 1.19711 1.01028 0.97796 0.98216 0.92746 0.98422 0.99060 0.92827 0.94049 0.91827 0.90369 0.84779 0.81973 0.73756 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -32.29 9.11 25.60 0.23 -32.06 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.82 5.13 30.59 0.16 -3.66 16 11 C -0.08 -2.86 5.29 29.85 0.16 -2.70 16 12 C -0.02 -0.73 5.09 -20.12 -0.10 -0.84 16 13 C -0.17 -4.68 9.51 22.02 0.21 -4.47 16 14 C -0.03 -0.56 10.09 22.38 0.23 -0.33 16 15 C -0.25 -5.68 6.33 -20.23 -0.13 -5.81 16 16 C 0.12 1.60 12.07 84.36 1.02 2.62 16 17 N -0.42 -6.81 7.18 -56.34 -0.40 -7.22 16 18 H 0.46 3.40 8.96 -213.42 -1.91 1.48 16 19 N -0.36 -10.48 12.70 -48.71 -0.62 -11.10 16 20 C 0.09 2.70 7.49 42.16 0.32 3.02 16 21 C -0.15 -4.99 9.65 22.38 0.22 -4.78 16 22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.34 8.06 -2.39 -0.02 2.32 16 28 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 29 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.25 0.10 8.06 -2.91 -0.02 0.08 16 32 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -77.35 280.18 3.41 -73.94 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -0.80 Total: 1.90 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 2.91 Total: -47.16 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -0.74 Total: -76.15 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -77.35 3.41 -73.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.934 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds