Wall clock time and date at job start Sun Mar 29 2020 21:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47172 * 270.00676 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00387 * 3 2 1 6 6 H 1.48502 * 109.47320 * 150.00106 * 3 2 1 7 7 C 1.37874 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00640 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47529 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47329 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.38541 * 126.21162 * 265.00222 * 12 11 10 14 14 N 1.31486 * 109.00658 * 179.97438 * 13 12 11 15 15 N 1.40040 * 108.91563 * 359.97438 * 14 13 12 16 16 C 1.36529 * 132.43543 * 179.97438 * 15 14 13 17 17 C 1.34934 * 120.66189 * 179.97438 * 16 15 14 18 18 C 1.40473 * 120.43067 * 0.02562 * 17 16 15 19 19 C 1.36056 * 119.59175 * 0.02562 * 18 17 16 20 20 C 1.37140 * 107.44206 * 0.02562 * 15 14 13 21 21 H 0.96995 * 119.99907 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47064 * 60.00007 * 9 7 2 23 23 H 1.09003 * 109.47113 * 300.00675 * 9 7 2 24 24 H 1.09001 * 109.46962 * 59.99591 * 10 9 7 25 25 H 1.09003 * 109.46997 * 300.00161 * 10 9 7 26 26 H 1.09001 * 109.47526 * 59.99823 * 11 10 9 27 27 H 1.09001 * 109.47332 * 299.99471 * 11 10 9 28 28 H 1.08003 * 125.50011 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.66852 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.78550 * 179.75136 * 17 16 15 31 31 H 1.07998 * 120.20517 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.39088 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 6 2.9175 -6.8173 -1.1157 14 7 3.7599 -7.7499 -0.7289 15 7 3.8805 -7.7025 0.6655 16 6 4.6122 -8.4387 1.5524 17 6 4.5482 -8.1840 2.8760 18 6 3.7253 -7.1552 3.3635 19 6 2.9894 -6.4135 2.4921 20 6 3.0681 -6.6929 1.1144 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8896 24 1 2.8721 -3.6042 0.8894 25 1 2.8721 -3.6043 -0.8905 26 1 0.8540 -5.0446 -0.8914 27 1 0.8535 -5.0451 0.8886 28 1 2.6290 -6.6175 -2.1372 29 1 5.2493 -9.2324 1.1910 30 1 5.1300 -8.7779 3.5654 31 1 3.6765 -6.9547 4.4236 32 1 2.3528 -5.6191 2.8528 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066008.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:25 Heat of formation + Delta-G solvation = 83.066463 kcal Electronic energy + Delta-G solvation = -14898.001225 eV Core-core repulsion = 12438.772487 eV Total energy + Delta-G solvation = -2459.228739 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.86392 -37.23730 -34.83849 -32.99989 -31.67945 -30.57354 -28.97070 -26.20367 -23.72380 -23.42953 -22.33073 -20.54873 -19.78210 -17.06202 -16.66136 -16.15825 -15.81143 -15.43438 -14.70806 -14.44068 -13.86771 -13.47382 -12.95501 -12.35793 -12.19128 -12.10901 -11.68607 -11.57289 -11.21676 -10.82157 -10.73593 -10.51904 -10.37210 -10.15922 -9.57344 -9.25883 -9.22739 -9.01325 -8.29419 -7.27994 -5.94824 -3.96596 0.82074 1.16590 2.37216 2.87133 3.34963 3.40971 3.44483 3.46040 4.30409 4.50482 4.70075 4.74739 4.91195 5.11560 5.40754 5.45433 5.53313 5.61746 5.76266 5.98624 6.14495 6.24049 6.32092 6.40406 6.45809 6.80857 6.89964 6.98267 7.03099 7.24146 7.69271 7.75039 7.91217 8.06698 8.50353 9.10918 9.67160 11.16430 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038415 B = 0.005089 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.710219 B = 5500.719049 C = 5796.516856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.040 4.040 12 C -0.221 4.221 13 C 0.076 3.924 14 N -0.327 5.327 15 N -0.280 5.280 16 C 0.104 3.896 17 C -0.166 4.166 18 C -0.101 4.101 19 C -0.095 4.095 20 C 0.093 3.907 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.190 0.810 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -16.386 5.277 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.079 4.079 12 C -0.232 4.232 13 C -0.099 4.099 14 N -0.151 5.151 15 N -0.048 5.048 16 C -0.021 4.021 17 C -0.189 4.189 18 C -0.123 4.123 19 C -0.115 4.115 20 C -0.025 4.025 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.207 0.793 29 H 0.179 0.821 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.328 -17.233 4.728 19.314 hybrid contribution 0.027 1.590 0.230 1.606 sum 7.354 -15.644 4.957 17.983 Atomic orbital electron populations 1.69964 1.06011 1.26464 1.51192 1.25014 0.94819 0.99141 0.95471 0.86635 0.79870 0.83651 0.78087 1.20697 1.21255 1.19949 1.21289 0.93018 0.91211 1.50125 0.92838 1.19128 0.94058 0.91383 0.97160 1.21630 0.98896 0.93292 1.00229 1.20041 0.94818 0.91039 1.01983 1.20332 1.08341 1.04706 0.89817 1.23729 0.93696 0.92262 1.00225 1.77788 1.26142 1.26243 0.84954 1.46142 1.29273 1.22927 1.06408 1.21364 0.95900 0.96550 0.88278 1.20763 1.03296 1.01287 0.93506 1.21086 0.95802 0.94967 1.00479 1.20739 1.00675 1.00763 0.89339 1.19405 0.95853 0.92354 0.94840 0.93090 0.96583 0.96657 0.93748 0.93538 0.91401 0.91940 0.79282 0.82064 0.83301 0.84446 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.17 5.13 -26.74 -0.14 -2.31 16 11 C -0.04 -0.71 5.70 -27.88 -0.16 -0.87 16 12 C -0.22 -3.67 5.44 -104.25 -0.57 -4.23 16 13 C 0.08 1.19 11.87 -17.59 -0.21 0.98 16 14 N -0.33 -5.31 12.66 30.46 0.39 -4.92 16 15 N -0.28 -4.21 3.90 -10.71 -0.04 -4.25 16 16 C 0.10 1.15 11.19 -16.63 -0.19 0.97 16 17 C -0.17 -1.51 9.98 -39.91 -0.40 -1.90 16 18 C -0.10 -1.02 10.07 -39.52 -0.40 -1.42 16 19 C -0.10 -1.25 10.09 -39.40 -0.40 -1.65 16 20 C 0.09 1.47 6.76 -84.27 -0.57 0.90 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.19 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -33.27 281.67 -7.46 -40.73 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.19 Total: -3.38 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.57 Total: -22.87 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 1.08 Total: -35.63 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.27 -7.46 -40.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066008.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.800 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds