Wall clock time and date at job start Sun Mar 29 2020 21:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47172 * 270.00676 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00387 * 3 2 1 6 6 H 1.48502 * 109.47320 * 150.00106 * 3 2 1 7 7 C 1.37874 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00640 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47529 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47329 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.38541 * 126.21162 * 265.00222 * 12 11 10 14 14 N 1.31486 * 109.00658 * 179.97438 * 13 12 11 15 15 N 1.40040 * 108.91563 * 359.97438 * 14 13 12 16 16 C 1.36529 * 132.43543 * 179.97438 * 15 14 13 17 17 C 1.34934 * 120.66189 * 179.97438 * 16 15 14 18 18 C 1.40473 * 120.43067 * 0.02562 * 17 16 15 19 19 C 1.36056 * 119.59175 * 0.02562 * 18 17 16 20 20 C 1.37140 * 107.44206 * 0.02562 * 15 14 13 21 21 H 0.96995 * 119.99907 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47064 * 60.00007 * 9 7 2 23 23 H 1.09003 * 109.47113 * 300.00675 * 9 7 2 24 24 H 1.09001 * 109.46962 * 59.99591 * 10 9 7 25 25 H 1.09003 * 109.46997 * 300.00161 * 10 9 7 26 26 H 1.09001 * 109.47526 * 59.99823 * 11 10 9 27 27 H 1.09001 * 109.47332 * 299.99471 * 11 10 9 28 28 H 1.08003 * 125.50011 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.66852 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.78550 * 179.75136 * 17 16 15 31 31 H 1.07998 * 120.20517 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.39088 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 6 2.9175 -6.8173 -1.1157 14 7 3.7599 -7.7499 -0.7289 15 7 3.8805 -7.7025 0.6655 16 6 4.6122 -8.4387 1.5524 17 6 4.5482 -8.1840 2.8760 18 6 3.7253 -7.1552 3.3635 19 6 2.9894 -6.4135 2.4921 20 6 3.0681 -6.6929 1.1144 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8896 24 1 2.8721 -3.6042 0.8894 25 1 2.8721 -3.6043 -0.8905 26 1 0.8540 -5.0446 -0.8914 27 1 0.8535 -5.0451 0.8886 28 1 2.6290 -6.6175 -2.1372 29 1 5.2493 -9.2324 1.1910 30 1 5.1300 -8.7779 3.5654 31 1 3.6765 -6.9547 4.4236 32 1 2.3528 -5.6191 2.8528 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066008.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:25 Heat of formation + Delta-G solvation = 63.785170 kcal Electronic energy + Delta-G solvation = -14898.837325 eV Core-core repulsion = 12438.772487 eV Total energy + Delta-G solvation = -2460.064838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.91865 -38.21412 -36.51384 -34.71142 -33.18568 -31.57596 -30.47994 -27.81894 -25.19228 -24.63148 -23.44418 -22.18083 -21.17664 -18.48545 -18.02538 -17.53814 -16.72472 -16.55247 -16.44510 -15.82101 -15.33734 -14.81144 -14.28904 -14.05766 -13.77779 -13.29705 -12.93172 -12.79969 -12.76426 -12.46163 -12.42834 -12.32869 -11.76530 -11.45593 -11.29687 -11.26206 -10.95540 -10.52630 -10.25418 -8.38768 -8.16439 -6.28443 -0.09157 0.17922 1.40085 1.40544 1.41756 1.52858 1.73659 2.42518 2.51188 3.15010 3.34060 3.75660 3.95261 4.01484 4.23135 4.28315 4.43408 4.59120 4.66465 4.71580 4.82508 4.93506 5.13869 5.24887 5.28724 5.29878 5.41657 5.54167 5.57672 5.65219 5.82651 5.90510 5.99488 6.30032 6.60130 6.88243 7.40396 8.94071 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038415 B = 0.005089 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.710219 B = 5500.719049 C = 5796.516856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.085 4.085 11 C -0.024 4.024 12 C -0.262 4.262 13 C 0.072 3.928 14 N -0.356 5.356 15 N -0.285 5.285 16 C 0.082 3.918 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.136 4.136 20 C 0.088 3.912 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.005 1.005 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.207 0.793 29 H 0.190 0.810 30 H 0.198 0.802 31 H 0.175 0.825 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -17.234 6.963 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.063 4.063 12 C -0.273 4.273 13 C -0.102 4.102 14 N -0.180 5.180 15 N -0.052 5.052 16 C -0.042 4.042 17 C -0.169 4.169 18 C -0.097 4.097 19 C -0.155 4.155 20 C -0.031 4.031 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.013 0.987 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.224 0.776 29 H 0.207 0.793 30 H 0.215 0.785 31 H 0.192 0.808 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.242 -18.103 6.407 21.312 hybrid contribution -0.503 1.739 -0.114 1.814 sum 8.740 -16.364 6.293 19.590 Atomic orbital electron populations 1.70091 1.07691 1.27718 1.51758 1.25944 0.95764 1.03176 0.94747 0.85488 0.78660 0.78633 0.78507 1.19801 1.20462 1.18979 1.21705 0.93335 0.92678 1.50474 0.92778 1.19037 0.94414 0.92859 0.95002 1.21386 0.97734 0.93527 0.99663 1.19739 0.94726 0.89794 1.02000 1.20160 1.10272 1.05872 0.91035 1.24013 0.93331 0.91924 1.00937 1.77700 1.27227 1.27106 0.85999 1.46428 1.29341 1.23048 1.06420 1.22208 0.96072 0.97120 0.88820 1.21407 1.01914 1.00282 0.93280 1.21650 0.93069 0.93107 1.01856 1.20918 1.03085 1.02681 0.88844 1.19721 0.95430 0.92224 0.95720 0.92753 0.98782 0.98687 0.94123 0.94055 0.91261 0.92042 0.77600 0.79279 0.78496 0.80798 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.75 5.13 30.59 0.16 -3.59 16 11 C -0.02 -0.88 5.70 29.85 0.17 -0.71 16 12 C -0.26 -8.94 5.44 -19.63 -0.11 -9.05 16 13 C 0.07 2.31 11.87 84.82 1.01 3.32 16 14 N -0.36 -11.55 12.66 -57.54 -0.73 -12.28 16 15 N -0.29 -8.31 3.90 -187.79 -0.73 -9.04 16 16 C 0.08 1.57 11.19 83.20 0.93 2.51 16 17 C -0.15 -1.99 9.98 22.05 0.22 -1.77 16 18 C -0.07 -1.22 10.07 22.31 0.22 -1.00 16 19 C -0.14 -3.41 10.09 22.39 0.23 -3.18 16 20 C 0.09 2.76 6.76 39.10 0.26 3.02 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 23 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.21 5.35 8.06 -2.91 -0.02 5.33 16 29 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.20 0.80 8.06 -2.91 -0.02 0.77 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -73.74 281.67 5.88 -67.86 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.09 Total: 3.84 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.94 Total: -40.25 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.18 Total: -78.56 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.74 5.88 -67.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066008.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.644 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds