Wall clock time and date at job start Sun Mar 29 2020 21:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48504 * 109.46809 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47403 * 300.00226 * 3 2 1 6 6 H 1.48502 * 109.46624 * 60.00729 * 3 2 1 7 7 C 1.37874 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.50691 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.40478 * 120.15463 * 89.99531 * 12 11 10 14 14 C 1.34952 * 120.30049 * 180.02562 * 13 12 11 15 15 N 1.36487 * 120.61201 * 359.97438 * 14 13 12 16 16 C 1.36835 * 132.57127 * 179.97438 * 15 14 13 17 17 C 1.35098 * 107.18152 * 180.02562 * 16 15 14 18 18 N 1.33514 * 108.62510 * 0.02562 * 17 16 15 19 19 C 1.32552 * 109.16285 * 0.02562 * 18 17 16 20 20 C 1.36023 * 120.15534 * 269.97974 * 12 11 10 21 21 H 0.96995 * 120.00189 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47444 * 60.00347 * 9 7 2 23 23 H 1.09007 * 109.47368 * 299.99902 * 9 7 2 24 24 H 1.08993 * 109.47426 * 59.99998 * 10 9 7 25 25 H 1.09003 * 109.46933 * 299.99394 * 10 9 7 26 26 H 1.09004 * 109.46995 * 59.99314 * 11 10 9 27 27 H 1.08998 * 109.47493 * 299.99839 * 11 10 9 28 28 H 1.08001 * 119.84669 * 359.97438 * 13 12 11 29 29 H 1.08002 * 119.69258 * 179.97438 * 14 13 12 30 30 H 1.08001 * 126.40772 * 0.06924 * 16 15 14 31 31 H 1.07998 * 125.68690 * 180.02562 * 17 16 15 32 32 H 1.08006 * 120.33605 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4595 -6.1325 -0.0005 13 6 2.9190 -6.6688 1.2139 14 6 3.7964 -7.6942 1.2167 15 7 4.2490 -8.2249 0.0435 16 6 5.1198 -9.2424 -0.2372 17 6 5.2009 -9.3386 -1.5823 18 7 4.4077 -8.4117 -2.1247 19 6 3.8195 -7.7222 -1.1573 20 6 2.9024 -6.6523 -1.1770 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6044 0.8894 25 1 2.8719 -3.6043 -0.8906 26 1 0.8533 -5.0450 -0.8896 27 1 0.8540 -5.0447 0.8903 28 1 2.5692 -6.2579 2.1494 29 1 4.1435 -8.0986 2.1561 30 1 5.6436 -9.8546 0.4821 31 1 5.8064 -10.0471 -2.1278 32 1 2.5554 -6.2484 -2.1167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:50 Heat of formation + Delta-G solvation = 67.302044 kcal Electronic energy + Delta-G solvation = -14737.807941 eV Core-core repulsion = 12277.895606 eV Total energy + Delta-G solvation = -2459.912335 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.72479 -37.88817 -34.91567 -33.39190 -31.80569 -30.21648 -29.07667 -26.73630 -24.03783 -23.30448 -21.86908 -21.11222 -20.04547 -17.87342 -16.71803 -16.29390 -15.81995 -15.25021 -14.64534 -14.45069 -14.13124 -13.80205 -13.41670 -12.62904 -12.56866 -12.07841 -11.69618 -11.58064 -11.25512 -10.98420 -10.81107 -10.50727 -10.36836 -10.09260 -9.72214 -9.35324 -9.08048 -8.81040 -8.35648 -7.72560 -6.00682 -4.02889 0.81566 1.31445 2.62086 2.87802 3.30893 3.38552 3.42877 3.59335 4.26154 4.43383 4.46614 4.67907 4.88327 5.15014 5.28394 5.35318 5.39899 5.53004 5.76433 5.82945 5.98393 6.04912 6.26489 6.35890 6.55082 6.62680 6.76218 6.83402 7.05993 7.09826 7.66850 7.80307 7.89811 7.99439 8.42162 9.04519 9.61482 11.10629 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050623 B = 0.004398 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.975785 B = 6364.716164 C = 6473.852826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.082 4.082 12 C -0.046 4.046 13 C -0.126 4.126 14 C 0.045 3.955 15 N -0.364 5.364 16 C -0.114 4.114 17 C 0.029 3.971 18 N -0.504 5.504 19 C 0.234 3.766 20 C -0.093 4.093 21 H 0.260 0.740 22 H 0.017 0.983 23 H 0.016 0.984 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -17.230 3.003 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.120 4.120 12 C -0.052 4.052 13 C -0.147 4.147 14 C -0.077 4.077 15 N -0.036 5.036 16 C -0.245 4.245 17 C -0.123 4.123 18 N -0.224 5.224 19 C -0.009 4.009 20 C -0.113 4.113 21 H 0.069 0.931 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.170 0.830 29 H 0.178 0.822 30 H 0.195 0.805 31 H 0.194 0.806 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.785 -17.048 2.196 18.479 hybrid contribution 0.696 0.719 0.972 1.395 sum 7.480 -16.329 3.168 18.238 Atomic orbital electron populations 1.69969 1.06038 1.26490 1.51027 1.25019 0.94837 0.99246 0.95343 0.86558 0.80152 0.83851 0.77590 1.19755 1.20986 1.21023 1.21296 0.93090 0.91096 1.50366 0.92676 1.19130 0.93979 0.91259 0.97342 1.21653 0.99071 0.92706 1.00718 1.20818 0.95805 0.92107 1.03243 1.20092 0.97210 0.96315 0.91585 1.20891 0.97912 0.95986 0.99869 1.21549 0.99610 0.98033 0.88531 1.42862 1.29545 1.23600 1.07581 1.22564 1.04297 0.98821 0.98816 1.22460 0.99916 0.98985 0.90972 1.70760 1.13180 1.09269 1.29159 1.21037 1.00572 0.98960 0.80370 1.20170 0.96832 0.94267 1.00030 0.93062 0.96438 0.96515 0.93230 0.93088 0.90694 0.90744 0.82986 0.82161 0.80479 0.80583 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.04 5.14 -26.73 -0.14 -2.18 16 11 C -0.08 -1.29 5.35 -27.89 -0.15 -1.44 16 12 C -0.05 -0.65 5.14 -104.58 -0.54 -1.19 16 13 C -0.13 -1.48 9.67 -39.91 -0.39 -1.87 16 14 C 0.04 0.48 10.95 -16.65 -0.18 0.30 16 15 N -0.36 -4.78 2.95 -62.66 -0.18 -4.97 16 16 C -0.11 -1.28 11.76 -16.44 -0.19 -1.47 16 17 C 0.03 0.36 11.83 -17.94 -0.21 0.14 16 18 N -0.50 -8.09 11.32 -12.78 -0.14 -8.24 16 19 C 0.23 3.65 7.81 -156.04 -1.22 2.43 16 20 C -0.09 -1.39 9.75 -39.36 -0.38 -1.78 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 27 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 28 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -32.80 280.42 -8.52 -41.32 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.19 Total: -2.82 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.95 Total: -20.11 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.41 Total: -39.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.80 -8.52 -41.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.624 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds