Wall clock time and date at job start Sun Mar 29 2020 21:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48504 * 109.46809 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47403 * 300.00226 * 3 2 1 6 6 H 1.48502 * 109.46624 * 60.00729 * 3 2 1 7 7 C 1.37874 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.50691 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.40478 * 120.15463 * 89.99531 * 12 11 10 14 14 C 1.34952 * 120.30049 * 180.02562 * 13 12 11 15 15 N 1.36487 * 120.61201 * 359.97438 * 14 13 12 16 16 C 1.36835 * 132.57127 * 179.97438 * 15 14 13 17 17 C 1.35098 * 107.18152 * 180.02562 * 16 15 14 18 18 N 1.33514 * 108.62510 * 0.02562 * 17 16 15 19 19 C 1.32552 * 109.16285 * 0.02562 * 18 17 16 20 20 C 1.36023 * 120.15534 * 269.97974 * 12 11 10 21 21 H 0.96995 * 120.00189 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47444 * 60.00347 * 9 7 2 23 23 H 1.09007 * 109.47368 * 299.99902 * 9 7 2 24 24 H 1.08993 * 109.47426 * 59.99998 * 10 9 7 25 25 H 1.09003 * 109.46933 * 299.99394 * 10 9 7 26 26 H 1.09004 * 109.46995 * 59.99314 * 11 10 9 27 27 H 1.08998 * 109.47493 * 299.99839 * 11 10 9 28 28 H 1.08001 * 119.84669 * 359.97438 * 13 12 11 29 29 H 1.08002 * 119.69258 * 179.97438 * 14 13 12 30 30 H 1.08001 * 126.40772 * 0.06924 * 16 15 14 31 31 H 1.07998 * 125.68690 * 180.02562 * 17 16 15 32 32 H 1.08006 * 120.33605 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4595 -6.1325 -0.0005 13 6 2.9190 -6.6688 1.2139 14 6 3.7964 -7.6942 1.2167 15 7 4.2490 -8.2249 0.0435 16 6 5.1198 -9.2424 -0.2372 17 6 5.2009 -9.3386 -1.5823 18 7 4.4077 -8.4117 -2.1247 19 6 3.8195 -7.7222 -1.1573 20 6 2.9024 -6.6523 -1.1770 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6044 0.8894 25 1 2.8719 -3.6043 -0.8906 26 1 0.8533 -5.0450 -0.8896 27 1 0.8540 -5.0447 0.8903 28 1 2.5692 -6.2579 2.1494 29 1 4.1435 -8.0986 2.1561 30 1 5.6436 -9.8546 0.4821 31 1 5.8064 -10.0471 -2.1278 32 1 2.5554 -6.2484 -2.1167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:50 Heat of formation + Delta-G solvation = 49.242501 kcal Electronic energy + Delta-G solvation = -14738.591062 eV Core-core repulsion = 12277.895606 eV Total energy + Delta-G solvation = -2460.695456 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.68173 -38.94207 -36.35792 -34.99649 -33.45232 -31.22552 -30.38392 -28.24769 -25.63221 -24.38616 -22.90711 -22.46266 -21.54533 -18.81223 -18.47097 -17.64347 -16.80766 -16.57079 -16.19269 -15.78421 -15.25525 -14.90559 -14.49757 -14.35692 -14.12950 -13.32780 -13.10666 -12.89788 -12.81771 -12.52165 -12.49642 -12.31492 -11.68288 -11.45229 -11.31043 -11.10043 -11.00629 -10.54032 -9.76636 -8.71479 -8.18927 -6.29510 -0.14210 0.32746 1.39954 1.40897 1.53680 1.73893 1.98177 2.41553 2.55347 3.14274 3.28745 3.59138 3.82570 3.90287 4.20307 4.28284 4.48023 4.52889 4.59962 4.65586 4.74892 4.96134 4.98832 5.08282 5.25188 5.27360 5.48215 5.54523 5.57440 5.72017 5.80304 5.89009 6.15878 6.27747 6.87923 6.93370 7.39697 8.92692 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050623 B = 0.004398 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.975785 B = 6364.716164 C = 6473.852826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.089 4.089 11 C -0.072 4.072 12 C -0.046 4.046 13 C -0.140 4.140 14 C 0.058 3.942 15 N -0.370 5.370 16 C -0.096 4.096 17 C 0.007 3.993 18 N -0.545 5.545 19 C 0.202 3.798 20 C -0.115 4.115 21 H 0.263 0.737 22 H -0.008 1.008 23 H 0.000 1.000 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.178 0.822 29 H 0.208 0.792 30 H 0.223 0.777 31 H 0.205 0.795 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -18.294 4.756 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.127 4.127 11 C -0.109 4.109 12 C -0.052 4.052 13 C -0.160 4.160 14 C -0.063 4.063 15 N -0.043 5.043 16 C -0.227 4.227 17 C -0.143 4.143 18 N -0.266 5.266 19 C -0.042 4.042 20 C -0.136 4.136 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.018 0.982 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.195 0.805 29 H 0.225 0.775 30 H 0.240 0.760 31 H 0.222 0.778 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.542 -18.126 3.950 20.423 hybrid contribution 0.179 0.962 0.420 1.065 sum 8.721 -17.164 4.370 19.742 Atomic orbital electron populations 1.70089 1.07667 1.27659 1.51842 1.25932 0.95749 1.03183 0.94818 0.85452 0.79028 0.79057 0.77841 1.18855 1.20500 1.20136 1.21747 0.93456 0.92643 1.50297 0.92561 1.19050 0.94454 0.92783 0.95222 1.21399 0.97899 0.92879 1.00522 1.20608 0.95870 0.90770 1.03680 1.19946 0.96869 0.95845 0.92589 1.21156 0.98538 0.96654 0.99637 1.22267 0.97958 0.96803 0.89254 1.43152 1.29677 1.23886 1.07565 1.23332 1.02545 0.97546 0.99232 1.23105 0.99989 0.99018 0.92202 1.70690 1.14561 1.10714 1.30660 1.21057 1.01662 0.99790 0.81643 1.20159 0.97981 0.95278 1.00134 0.92776 0.98950 0.98172 0.92571 0.93997 0.91231 0.89465 0.80505 0.77487 0.76005 0.77812 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.09 -3.56 5.14 30.60 0.16 -3.40 16 11 C -0.07 -2.27 5.35 29.85 0.16 -2.11 16 12 C -0.05 -1.29 5.14 -19.84 -0.10 -1.39 16 13 C -0.14 -2.93 9.67 22.06 0.21 -2.72 16 14 C 0.06 1.05 10.95 83.21 0.91 1.96 16 15 N -0.37 -8.80 2.95 -352.16 -1.04 -9.84 16 16 C -0.10 -1.82 11.76 83.19 0.98 -0.84 16 17 C 0.01 0.17 11.83 83.71 0.99 1.16 16 18 N -0.54 -17.52 11.32 -194.35 -2.20 -19.71 16 19 C 0.20 6.25 7.81 134.11 1.05 7.29 16 20 C -0.12 -3.55 9.75 22.42 0.22 -3.33 16 21 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 22 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 23 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.23 8.08 -2.38 -0.02 2.21 16 27 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 28 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.22 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.21 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -72.77 280.42 5.59 -67.18 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.09 Total: 4.57 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 5.42 Total: -32.37 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -2.95 Total: -85.81 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -72.77 5.59 -67.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.427 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds