Wall clock time and date at job start Sun Mar 29 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34224 * 126.56834 * 264.68761 * 12 11 10 14 14 N 1.36920 * 109.91310 * 179.89306 * 13 12 11 15 15 H 0.96997 * 124.98579 * 180.13418 * 14 13 12 16 16 C 1.37423 * 110.02192 * 0.38493 * 14 13 12 17 17 N 1.32660 * 133.19094 * 179.75197 * 16 14 13 18 18 C 1.31593 * 121.66829 * 180.02562 * 17 16 14 19 19 C 1.38663 * 121.58455 * 0.02562 * 18 17 16 20 20 C 1.38197 * 119.40874 * 359.97041 * 19 18 17 21 21 C 1.39689 * 118.04424 * 0.02562 * 20 19 18 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08003 * 125.04259 * 0.03154 * 13 12 11 30 30 H 1.07997 * 119.20463 * 179.97438 * 18 17 16 31 31 H 1.08001 * 120.29403 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.97887 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.9027 -6.8053 -1.0731 14 7 3.7849 -7.7771 -0.6832 15 1 4.2381 -8.3899 -1.2830 16 6 3.9296 -7.7603 0.6833 17 7 4.6481 -8.4870 1.5292 18 6 4.6142 -8.2711 2.8269 19 6 3.8245 -7.2726 3.3766 20 6 3.0534 -6.4824 2.5455 21 6 3.1048 -6.7289 1.1715 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 2.6088 -6.6077 -2.0934 30 1 5.2152 -8.8870 3.4794 31 1 3.8122 -7.1139 4.4449 32 1 2.4295 -5.6973 2.9464 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:22 Heat of formation + Delta-G solvation = 47.088709 kcal Electronic energy + Delta-G solvation = -14833.810445 eV Core-core repulsion = 12373.021594 eV Total energy + Delta-G solvation = -2460.788851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39628 -37.74785 -34.85923 -32.98019 -31.88981 -29.90219 -29.23972 -26.55322 -23.61351 -23.33438 -22.43223 -20.24512 -19.08972 -18.06546 -16.63741 -16.17231 -15.87893 -14.92933 -14.58988 -14.43035 -13.93099 -13.15881 -12.86655 -12.78216 -12.45633 -12.10301 -11.97484 -11.73334 -11.12352 -10.74037 -10.68861 -10.47479 -10.12237 -9.61434 -9.40214 -9.20332 -9.02626 -8.35502 -8.31255 -7.71308 -5.96601 -3.98330 1.11093 1.47165 2.82121 2.88227 3.32864 3.40377 3.45048 3.99956 4.49137 4.58181 4.84357 4.89474 5.09047 5.26618 5.39230 5.48129 5.61944 5.76477 5.90838 6.13939 6.19089 6.31911 6.43286 6.57555 6.68112 6.89195 6.99268 7.09649 7.21920 7.39629 7.73277 7.88615 8.04796 8.08533 8.48353 9.09407 9.65626 11.14732 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.005007 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.219308 B = 5590.492052 C = 5887.686126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.102 4.102 11 C -0.051 4.051 12 C -0.137 4.137 13 C 0.045 3.955 14 N -0.584 5.584 15 H 0.416 0.584 16 C 0.282 3.718 17 N -0.507 5.507 18 C 0.132 3.868 19 C -0.210 4.210 20 C -0.020 4.020 21 C -0.145 4.145 22 H 0.259 0.741 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.177 0.823 30 H 0.156 0.844 31 H 0.135 0.865 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -15.925 2.066 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.140 4.140 11 C -0.089 4.089 12 C -0.144 4.144 13 C -0.079 4.079 14 N -0.191 5.191 15 H 0.253 0.747 16 C 0.048 3.952 17 N -0.220 5.220 18 C -0.034 4.034 19 C -0.232 4.232 20 C -0.047 4.047 21 C -0.153 4.153 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.194 0.806 30 H 0.173 0.827 31 H 0.152 0.848 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.379 -16.519 1.544 17.775 hybrid contribution 0.196 1.334 0.035 1.349 sum 6.575 -15.185 1.580 16.623 Atomic orbital electron populations 1.69976 1.06019 1.26379 1.51249 1.25019 0.94822 0.99177 0.95457 0.86576 0.80166 0.83957 0.77553 1.19784 1.21049 1.21034 1.21322 0.93067 0.91174 1.50041 0.92753 1.19133 0.94060 0.91409 0.97174 1.21605 0.98903 0.93097 1.00364 1.20158 0.95149 0.91421 1.02129 1.20603 1.03212 1.00378 0.90205 1.21695 0.94973 0.91606 0.99645 1.41465 1.40861 1.32592 1.04197 0.74701 1.18408 0.96533 0.94941 0.85270 1.66445 1.23077 1.28698 1.03820 1.22358 0.96299 0.95630 0.89094 1.21813 1.01188 0.99260 1.00913 1.21076 0.95663 0.96866 0.91065 1.19852 1.01828 0.99309 0.94264 0.93133 0.96616 0.96612 0.93541 0.93513 0.91445 0.91576 0.80612 0.82651 0.84760 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.10 -2.12 5.13 -26.74 -0.14 -2.25 16 11 C -0.05 -0.86 5.75 -27.88 -0.16 -1.02 16 12 C -0.14 -2.13 5.57 -102.76 -0.57 -2.70 16 13 C 0.05 0.58 11.74 -16.69 -0.20 0.38 16 14 N -0.58 -7.30 6.05 -12.14 -0.07 -7.37 16 15 H 0.42 3.88 8.96 -40.82 -0.37 3.51 16 16 C 0.28 4.26 8.43 -155.68 -1.31 2.95 16 17 N -0.51 -7.39 10.39 -12.27 -0.13 -7.51 16 18 C 0.13 1.59 11.14 -17.50 -0.20 1.40 16 19 C -0.21 -2.49 10.10 -39.44 -0.40 -2.89 16 20 C -0.02 -0.29 10.22 -39.05 -0.40 -0.69 16 21 C -0.15 -2.29 6.37 -105.11 -0.67 -2.96 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.18 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -32.97 280.68 -8.98 -41.95 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.14 Total: -0.74 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -4.59 Total: -21.04 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.54 Total: -41.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.97 -8.98 -41.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.035 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds