Wall clock time and date at job start Sun Mar 29 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34224 * 126.56834 * 264.68761 * 12 11 10 14 14 N 1.36920 * 109.91310 * 179.89306 * 13 12 11 15 15 H 0.96997 * 124.98579 * 180.13418 * 14 13 12 16 16 C 1.37423 * 110.02192 * 0.38493 * 14 13 12 17 17 N 1.32660 * 133.19094 * 179.75197 * 16 14 13 18 18 C 1.31593 * 121.66829 * 180.02562 * 17 16 14 19 19 C 1.38663 * 121.58455 * 0.02562 * 18 17 16 20 20 C 1.38197 * 119.40874 * 359.97041 * 19 18 17 21 21 C 1.39689 * 118.04424 * 0.02562 * 20 19 18 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08003 * 125.04259 * 0.03154 * 13 12 11 30 30 H 1.07997 * 119.20463 * 179.97438 * 18 17 16 31 31 H 1.08001 * 120.29403 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.97887 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.9027 -6.8053 -1.0731 14 7 3.7849 -7.7771 -0.6832 15 1 4.2381 -8.3899 -1.2830 16 6 3.9296 -7.7603 0.6833 17 7 4.6481 -8.4870 1.5292 18 6 4.6142 -8.2711 2.8269 19 6 3.8245 -7.2726 3.3766 20 6 3.0534 -6.4824 2.5455 21 6 3.1048 -6.7289 1.1715 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 2.6088 -6.6077 -2.0934 30 1 5.2152 -8.8870 3.4794 31 1 3.8122 -7.1139 4.4449 32 1 2.4295 -5.6973 2.9464 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:22 Heat of formation + Delta-G solvation = 27.884015 kcal Electronic energy + Delta-G solvation = -14834.643223 eV Core-core repulsion = 12373.021594 eV Total energy + Delta-G solvation = -2461.621629 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.42142 -38.75504 -36.52879 -34.67475 -33.33285 -31.23555 -30.39827 -28.21845 -25.22890 -24.56423 -23.43720 -22.06675 -20.26231 -19.13994 -18.33255 -17.62014 -16.90822 -16.51171 -15.96426 -15.63068 -15.42266 -14.58474 -14.18318 -14.06859 -13.85326 -13.55732 -13.27025 -13.17904 -12.85598 -12.46193 -12.37036 -12.35212 -11.44557 -11.34727 -11.26259 -11.00267 -10.52908 -10.32460 -9.35875 -8.81461 -8.17568 -6.28384 0.08967 0.46195 1.40293 1.40645 1.53956 1.73590 1.92461 2.42601 2.97417 3.15019 3.65441 3.82078 3.87215 4.13380 4.26312 4.42762 4.51046 4.63036 4.70575 4.79721 4.86986 5.01781 5.23127 5.29401 5.29674 5.40677 5.56927 5.57810 5.67202 5.84125 5.90980 6.05838 6.30188 6.47911 6.88859 7.09708 7.40607 8.93952 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.005007 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.219308 B = 5590.492052 C = 5887.686126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.086 4.086 11 C -0.036 4.036 12 C -0.177 4.177 13 C 0.070 3.930 14 N -0.573 5.573 15 H 0.431 0.569 16 C 0.259 3.741 17 N -0.522 5.522 18 C 0.128 3.872 19 C -0.199 4.199 20 C -0.047 4.047 21 C -0.171 4.171 22 H 0.263 0.737 23 H -0.003 1.003 24 H -0.008 1.008 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.211 0.789 30 H 0.194 0.806 31 H 0.166 0.834 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -16.534 2.066 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.123 4.123 11 C -0.074 4.074 12 C -0.184 4.184 13 C -0.055 4.055 14 N -0.181 5.181 15 H 0.271 0.729 16 C 0.026 3.974 17 N -0.236 5.236 18 C -0.037 4.037 19 C -0.220 4.220 20 C -0.073 4.073 21 C -0.178 4.178 22 H 0.072 0.928 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.211 0.789 31 H 0.184 0.816 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.831 -17.157 1.538 18.923 hybrid contribution -0.246 1.465 0.084 1.488 sum 7.585 -15.692 1.622 17.505 Atomic orbital electron populations 1.70097 1.07673 1.27632 1.51887 1.25937 0.95751 1.03160 0.94807 0.85448 0.78982 0.79022 0.77892 1.18928 1.20180 1.20307 1.21741 0.93358 0.92683 1.50257 0.92745 1.19048 0.94457 0.92914 0.95005 1.21364 0.97719 0.93383 0.99869 1.19866 0.95113 0.90153 1.02226 1.20435 1.04951 1.01512 0.91507 1.22167 0.93011 0.89964 1.00395 1.41498 1.40383 1.32494 1.03738 0.72903 1.18663 0.97132 0.95358 0.86293 1.66542 1.23312 1.28952 1.04809 1.23068 0.96096 0.95715 0.88823 1.22188 0.99559 0.98002 1.02273 1.21310 0.96873 0.97877 0.91244 1.20138 1.02551 1.00070 0.95043 0.92779 0.98481 0.99000 0.94484 0.93344 0.90513 0.92376 0.77249 0.78928 0.81599 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.22 4.97 29.84 0.15 1.37 16 10 C -0.09 -3.62 5.13 30.59 0.16 -3.46 16 11 C -0.04 -1.22 5.75 29.85 0.17 -1.05 16 12 C -0.18 -5.42 5.57 -18.66 -0.10 -5.53 16 13 C 0.07 1.68 11.74 82.98 0.97 2.65 16 14 N -0.57 -13.32 6.05 -192.33 -1.16 -14.48 16 15 H 0.43 7.12 8.96 -92.71 -0.83 6.29 16 16 C 0.26 7.54 8.43 133.93 1.13 8.67 16 17 N -0.52 -14.39 10.39 -192.73 -2.00 -16.39 16 18 C 0.13 2.81 11.14 84.83 0.95 3.76 16 19 C -0.20 -4.38 10.10 22.36 0.23 -4.15 16 20 C -0.05 -1.31 10.22 22.61 0.23 -1.08 16 21 C -0.17 -5.36 6.37 -20.18 -0.13 -5.49 16 22 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -71.61 280.68 3.88 -67.74 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.29 Total: 8.21 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 4.45 Total: -35.09 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.88 Total: -87.67 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.61 3.88 -67.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.621 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds