Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38536 * 120.47423 * 2 1 4 4 C 1.38655 * 118.50779 * 180.26935 * 3 2 1 5 5 C 1.50698 * 120.30868 * 179.72544 * 4 3 2 6 6 C 1.52996 * 109.47590 * 270.02224 * 5 4 3 7 7 C 1.52999 * 109.47218 * 180.02562 * 6 5 4 8 8 C 1.50709 * 109.46897 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99673 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99787 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99860 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99972 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46712 * 60.00231 * 12 10 8 14 14 H 1.48497 * 109.47083 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47147 * 300.00367 * 12 10 8 16 16 C 1.38506 * 119.37971 * 359.75326 * 4 3 2 17 17 N 1.31566 * 120.91298 * 359.97438 * 16 4 3 18 18 C 1.32809 * 121.62108 * 0.02562 * 17 16 4 19 19 C 1.43205 * 119.73839 * 179.97438 * 18 17 16 20 20 N 3.47706 * 80.58638 * 179.77341 * 2 1 3 21 21 H 1.08997 * 109.46625 * 270.22254 * 1 2 3 22 22 H 1.08994 * 109.47129 * 30.22511 * 1 2 3 23 23 H 1.09006 * 109.46801 * 150.22721 * 1 2 3 24 24 H 1.08005 * 120.74570 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.46827 * 30.02992 * 5 4 3 26 26 H 1.09000 * 109.46604 * 150.02468 * 5 4 3 27 27 H 1.09005 * 109.47408 * 300.00703 * 6 5 4 28 28 H 1.09003 * 109.46702 * 59.99992 * 6 5 4 29 29 H 1.08997 * 109.47056 * 300.00147 * 7 6 5 30 30 H 1.08996 * 109.46918 * 60.00817 * 7 6 5 31 31 H 0.97003 * 119.99891 * 180.02562 * 11 10 8 32 32 H 1.08003 * 119.54611 * 180.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1940 0.0000 4 6 3.5953 1.1464 -0.0057 5 6 4.4000 2.4206 -0.0122 6 6 4.6658 2.8487 -1.4568 7 6 5.4834 4.1419 -1.4632 8 6 5.7446 4.5639 -2.8862 9 1 5.3651 3.9693 -3.7041 10 6 6.4681 5.7090 -3.1439 11 7 6.9306 6.4326 -2.1479 12 14 6.7926 6.2317 -4.9077 13 1 5.4999 6.4602 -5.6019 14 1 7.5859 7.4869 -4.9139 15 1 7.5492 5.1637 -5.6092 16 6 4.2330 -0.0831 -0.0060 17 7 3.5422 -1.2028 -0.0005 18 6 2.2141 -1.2016 0.0051 19 6 1.5027 -2.4444 0.0105 20 7 0.9383 -3.4302 0.0136 21 1 -0.3632 0.0040 1.0277 22 1 -0.3633 0.8879 -0.5173 23 1 -0.3633 -0.8921 -0.5103 24 1 1.6896 2.1406 0.0004 25 1 3.8439 3.2040 0.5026 26 1 5.3488 2.2535 0.4977 27 1 5.2219 2.0651 -1.9715 28 1 3.7170 3.0156 -1.9666 29 1 4.9276 4.9256 -0.9484 30 1 6.4322 3.9745 -0.9536 31 1 7.4393 7.2384 -2.3291 32 1 5.3123 -0.1233 -0.0101 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = 36.064638 kcal Electronic energy + Delta-G solvation = -14459.602049 eV Core-core repulsion = 11998.335158 eV Total energy + Delta-G solvation = -2461.266891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65431 -36.84571 -35.22701 -33.90443 -33.02903 -30.97724 -27.87118 -27.39231 -24.63150 -23.22311 -21.56338 -20.20557 -19.38600 -17.11579 -16.35758 -15.14506 -15.03259 -14.63353 -14.39321 -14.02531 -13.41077 -13.31461 -13.27427 -13.02411 -12.89392 -12.77409 -12.34516 -12.12854 -11.73779 -11.36023 -10.86571 -10.84152 -10.58932 -9.88234 -9.84442 -9.66439 -9.40286 -9.19907 -8.77569 -8.39154 -6.04520 -4.07192 0.47558 1.06363 2.39165 2.71637 3.30733 3.35511 3.37887 3.42793 3.75232 4.36178 4.42290 4.54129 4.75043 4.86184 5.07830 5.21716 5.28065 5.30720 5.32228 5.64839 5.78019 5.85316 5.92048 6.09176 6.16256 6.46724 6.61164 6.73336 7.01046 7.21196 7.61026 7.64556 7.73976 7.94757 8.36914 8.99687 9.57409 11.06617 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046933 B = 0.004227 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.445647 B = 6622.255904 C = 6650.220531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.080 4.080 4 C -0.078 4.078 5 C -0.087 4.087 6 C -0.104 4.104 7 C 0.021 3.979 8 C -0.523 4.523 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.101 3.899 17 N -0.446 5.446 18 C 0.159 3.841 19 C 0.278 3.722 20 N -0.406 5.406 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.147 0.853 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -9.110 5.953 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.106 4.106 4 C -0.081 4.081 5 C -0.125 4.125 6 C -0.142 4.142 7 C -0.016 4.016 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.060 4.060 17 N -0.155 5.155 18 C 0.022 3.978 19 C -0.039 4.039 20 N -0.083 5.083 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.165 0.835 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.915 -11.290 5.996 16.178 hybrid contribution 0.150 1.552 -1.008 1.856 sum -9.765 -9.738 4.988 14.666 Atomic orbital electron populations 1.20858 0.89721 1.03750 1.03255 1.20754 0.97437 0.92302 0.97898 1.21450 0.93574 0.97935 0.97616 1.21537 0.94653 0.97858 0.94004 1.20881 0.99005 0.91884 1.00688 1.21670 1.00579 1.00301 0.91638 1.19114 0.94733 0.90661 0.97088 1.21211 1.33900 1.08504 0.92525 0.92755 1.25012 0.95761 0.96567 0.97029 1.69947 1.36744 1.15968 1.30818 0.86668 0.78346 0.77921 0.85145 1.20249 1.21276 1.20208 1.22748 1.00556 0.86137 0.96526 1.67500 1.05964 1.32177 1.09836 1.16189 0.89292 0.86465 1.05883 1.25024 0.92989 0.92035 0.93836 1.81217 1.09353 1.09591 1.08142 0.90117 0.90026 0.91325 0.83516 0.90522 0.90330 0.92983 0.93122 0.96493 0.96404 0.92904 0.81394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.62 36.01 0.35 -0.58 16 2 C -0.08 -0.83 5.93 -104.07 -0.62 -1.45 16 3 C -0.08 -0.86 9.53 -39.32 -0.37 -1.23 16 4 C -0.08 -0.94 5.16 -104.37 -0.54 -1.48 16 5 C -0.09 -1.19 5.36 -27.89 -0.15 -1.34 16 6 C -0.10 -1.88 5.13 -26.73 -0.14 -2.02 16 7 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 8 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 9 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 12 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.10 1.23 10.86 -17.57 -0.19 1.04 16 17 N -0.45 -5.98 10.28 -11.15 -0.11 -6.09 16 18 C 0.16 1.97 6.58 -85.07 -0.56 1.41 16 19 C 0.28 3.60 14.01 -22.47 -0.31 3.29 16 20 N -0.41 -5.74 18.54 41.83 0.78 -4.97 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 23 H 0.07 0.56 7.10 -51.93 -0.37 0.19 16 24 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 25 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 26 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -30.19 288.95 -6.49 -36.67 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -4.13 Total: -5.68 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.09 Total: -15.01 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 1.40 Total: -36.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.19 -6.49 -36.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.736 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds