Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38536 * 120.47423 * 2 1 4 4 C 1.38655 * 118.50779 * 180.26935 * 3 2 1 5 5 C 1.50698 * 120.30868 * 179.72544 * 4 3 2 6 6 C 1.52996 * 109.47590 * 270.02224 * 5 4 3 7 7 C 1.52999 * 109.47218 * 180.02562 * 6 5 4 8 8 C 1.50709 * 109.46897 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99673 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99787 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99860 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99972 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46712 * 60.00231 * 12 10 8 14 14 H 1.48497 * 109.47083 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47147 * 300.00367 * 12 10 8 16 16 C 1.38506 * 119.37971 * 359.75326 * 4 3 2 17 17 N 1.31566 * 120.91298 * 359.97438 * 16 4 3 18 18 C 1.32809 * 121.62108 * 0.02562 * 17 16 4 19 19 C 1.43205 * 119.73839 * 179.97438 * 18 17 16 20 20 N 3.47706 * 80.58638 * 179.77341 * 2 1 3 21 21 H 1.08997 * 109.46625 * 270.22254 * 1 2 3 22 22 H 1.08994 * 109.47129 * 30.22511 * 1 2 3 23 23 H 1.09006 * 109.46801 * 150.22721 * 1 2 3 24 24 H 1.08005 * 120.74570 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.46827 * 30.02992 * 5 4 3 26 26 H 1.09000 * 109.46604 * 150.02468 * 5 4 3 27 27 H 1.09005 * 109.47408 * 300.00703 * 6 5 4 28 28 H 1.09003 * 109.46702 * 59.99992 * 6 5 4 29 29 H 1.08997 * 109.47056 * 300.00147 * 7 6 5 30 30 H 1.08996 * 109.46918 * 60.00817 * 7 6 5 31 31 H 0.97003 * 119.99891 * 180.02562 * 11 10 8 32 32 H 1.08003 * 119.54611 * 180.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1940 0.0000 4 6 3.5953 1.1464 -0.0057 5 6 4.4000 2.4206 -0.0122 6 6 4.6658 2.8487 -1.4568 7 6 5.4834 4.1419 -1.4632 8 6 5.7446 4.5639 -2.8862 9 1 5.3651 3.9693 -3.7041 10 6 6.4681 5.7090 -3.1439 11 7 6.9306 6.4326 -2.1479 12 14 6.7926 6.2317 -4.9077 13 1 5.4999 6.4602 -5.6019 14 1 7.5859 7.4869 -4.9139 15 1 7.5492 5.1637 -5.6092 16 6 4.2330 -0.0831 -0.0060 17 7 3.5422 -1.2028 -0.0005 18 6 2.2141 -1.2016 0.0051 19 6 1.5027 -2.4444 0.0105 20 7 0.9383 -3.4302 0.0136 21 1 -0.3632 0.0040 1.0277 22 1 -0.3633 0.8879 -0.5173 23 1 -0.3633 -0.8921 -0.5103 24 1 1.6896 2.1406 0.0004 25 1 3.8439 3.2040 0.5026 26 1 5.3488 2.2535 0.4977 27 1 5.2219 2.0651 -1.9715 28 1 3.7170 3.0156 -1.9666 29 1 4.9276 4.9256 -0.9484 30 1 6.4322 3.9745 -0.9536 31 1 7.4393 7.2384 -2.3291 32 1 5.3123 -0.1233 -0.0101 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = 19.488197 kcal Electronic energy + Delta-G solvation = -14460.320858 eV Core-core repulsion = 11998.335158 eV Total energy + Delta-G solvation = -2461.985699 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.57380 -37.90150 -36.61604 -34.79712 -34.72284 -32.48183 -29.03064 -28.50770 -26.08788 -24.42879 -22.76792 -21.65731 -20.32165 -18.41029 -18.04395 -16.55015 -16.05197 -15.97482 -15.46634 -15.42446 -14.44544 -14.33907 -14.27836 -14.12774 -13.95760 -13.87467 -13.49424 -13.38765 -13.14797 -12.76705 -12.51768 -12.49352 -12.29936 -11.43384 -11.31157 -11.20875 -10.62456 -10.53630 -10.48821 -9.81130 -8.15583 -6.25349 -0.46510 0.19790 1.38255 1.43630 1.45147 1.53038 1.72998 2.44444 2.46832 2.81457 3.18158 3.55624 3.66489 3.86351 4.01399 4.09581 4.35720 4.46239 4.59147 4.69958 4.73272 4.86772 5.02197 5.08491 5.17191 5.30556 5.33427 5.36628 5.56558 5.60987 5.85827 5.94553 6.21078 6.31873 6.72355 6.92769 7.43760 8.95460 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046933 B = 0.004227 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.445647 B = 6622.255904 C = 6650.220531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.075 4.075 4 C -0.082 4.082 5 C -0.074 4.074 6 C -0.092 4.092 7 C 0.022 3.978 8 C -0.543 4.543 9 H 0.057 0.943 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.957 3.043 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.096 3.904 17 N -0.469 5.469 18 C 0.145 3.855 19 C 0.292 3.708 20 N -0.432 5.432 21 H 0.096 0.904 22 H 0.100 0.900 23 H 0.063 0.937 24 H 0.171 0.829 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.053 0.947 29 H -0.002 1.002 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -9.101 5.491 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.100 4.100 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.015 4.015 8 C -0.581 4.581 9 H 0.075 0.925 10 C -0.196 4.196 11 N -0.572 5.572 12 Si 0.782 3.218 13 H -0.193 1.193 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.064 4.064 17 N -0.178 5.178 18 C 0.008 3.992 19 C -0.025 4.025 20 N -0.109 5.109 21 H 0.115 0.885 22 H 0.119 0.881 23 H 0.082 0.918 24 H 0.188 0.812 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.071 0.929 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.005 -11.300 5.532 16.715 hybrid contribution 0.474 1.548 -0.836 1.822 sum -10.531 -9.752 4.696 15.101 Atomic orbital electron populations 1.20954 0.87655 1.04457 1.04473 1.20984 0.98801 0.91312 0.96196 1.21732 0.93046 0.98966 0.96289 1.21352 0.95204 0.96790 0.95139 1.20649 0.99884 0.92982 0.97718 1.21425 0.99469 0.97197 0.94831 1.19044 0.94388 0.93014 0.95078 1.21726 1.33580 1.08623 0.94192 0.92455 1.25893 0.95673 0.96790 1.01266 1.70070 1.37657 1.16493 1.33016 0.85619 0.78514 0.77561 0.80084 1.19264 1.21032 1.19443 1.22946 1.01197 0.85973 0.96286 1.67471 1.06642 1.32841 1.10823 1.16357 0.89284 0.86830 1.06704 1.25126 0.92420 0.91883 0.93044 1.81224 1.10264 1.10231 1.09173 0.88540 0.88112 0.91801 0.81200 0.89645 0.89899 0.93167 0.92821 0.98403 0.98573 0.92866 0.80275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.62 71.24 0.69 -0.82 16 2 C -0.07 -1.26 5.93 -19.51 -0.12 -1.37 16 3 C -0.08 -1.39 9.53 22.44 0.21 -1.17 16 4 C -0.08 -1.82 5.16 -19.70 -0.10 -1.92 16 5 C -0.07 -1.92 5.36 29.85 0.16 -1.76 16 6 C -0.09 -3.22 5.13 30.59 0.16 -3.06 16 7 C 0.02 1.05 4.97 29.85 0.15 1.20 16 8 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 9 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 10 C 0.00 0.09 5.46 84.65 0.46 0.55 16 11 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 12 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 C 0.10 2.22 10.86 84.80 0.92 3.14 16 17 N -0.47 -12.04 10.28 -189.20 -1.94 -13.99 16 18 C 0.15 3.39 6.58 40.53 0.27 3.66 16 19 C 0.29 7.27 14.01 88.33 1.24 8.51 16 20 N -0.43 -11.92 18.54 19.00 0.35 -11.57 16 21 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 23 H 0.06 0.90 7.10 -2.38 -0.02 0.89 16 24 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 25 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 26 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 27 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -64.54 288.95 6.10 -58.45 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: 1.11 Total: -1.00 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.27 Total: -22.33 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.31 Total: -80.14 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -64.54 6.10 -58.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.937 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds