Wall clock time and date at job start Sun Mar 29 2020 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39726 * 120.20988 * 27.19957 * 3 2 1 5 5 C 1.37798 * 119.92289 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.82831 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46946 * 90.00039 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.38571 * 120.34145 * 0.27136 * 5 4 3 18 18 C 1.38012 * 120.42320 * 359.44598 * 17 5 4 19 19 C 1.38888 * 120.06979 * 0.55291 * 18 17 5 20 20 N 1.39031 * 120.17138 * 179.70211 * 19 18 17 21 21 H 1.08001 * 120.04109 * 359.97438 * 4 3 2 22 22 H 1.08992 * 109.46894 * 329.99757 * 6 5 4 23 23 H 1.08996 * 109.46805 * 209.99907 * 6 5 4 24 24 H 1.09001 * 109.47372 * 60.00128 * 7 6 5 25 25 H 1.09004 * 109.47108 * 299.99872 * 7 6 5 26 26 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 27 27 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 28 28 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 29 29 H 1.08009 * 119.78841 * 179.73008 * 17 5 4 30 30 H 1.08001 * 119.96838 * 180.27703 * 18 17 5 31 31 H 0.96998 * 119.99838 * 180.02562 * 20 19 18 32 32 H 0.97006 * 119.99965 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2715 -1.0730 -0.5519 5 6 4.6495 -1.0660 -0.5493 6 6 5.4061 -2.2254 -1.1446 7 6 5.6613 -1.9592 -2.6295 8 6 6.4301 -3.1360 -3.2337 9 6 6.6809 -2.8741 -4.6965 10 1 6.3277 -1.9596 -5.1496 11 6 7.3613 -3.8020 -5.4562 12 7 7.5806 -3.5732 -6.7326 13 14 7.9728 -5.3834 -4.6722 14 1 6.9241 -6.4289 -4.7836 15 1 9.2019 -5.8388 -5.3700 16 1 8.2784 -5.1397 -3.2396 17 6 5.3430 -0.0013 0.0035 18 6 4.6625 1.0692 0.5473 19 6 3.2737 1.0802 0.5539 20 7 2.5860 2.1547 1.1067 21 1 2.7360 -1.9074 -0.9802 22 1 4.8192 -3.1372 -1.0345 23 1 6.3585 -2.3416 -0.6274 24 1 6.2483 -1.0474 -2.7395 25 1 4.7089 -1.8429 -3.1467 26 1 5.8435 -4.0481 -3.1236 27 1 7.3825 -3.2519 -2.7164 28 1 8.0596 -4.2259 -7.2669 29 1 6.4231 -0.0071 0.0047 30 1 5.2104 1.8972 0.9722 31 1 1.6160 2.1596 1.1103 32 1 3.0762 2.8994 1.4888 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:46 Heat of formation + Delta-G solvation = 29.265453 kcal Electronic energy + Delta-G solvation = -14486.936503 eV Core-core repulsion = 12025.374778 eV Total energy + Delta-G solvation = -2461.561726 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84882 -36.63186 -35.69979 -33.89134 -32.09909 -31.32055 -29.65869 -26.54679 -23.97143 -23.30179 -21.52179 -20.05422 -18.27069 -17.30529 -17.04760 -16.60099 -14.83609 -14.61079 -14.27374 -14.12711 -13.82580 -13.73647 -13.13804 -12.99519 -12.78369 -12.61375 -12.14418 -11.70899 -11.57114 -11.21966 -11.11212 -10.68688 -10.50259 -9.87542 -9.67355 -9.52383 -9.13974 -9.01010 -8.50359 -7.62606 -6.00761 -3.98468 0.84871 1.47811 2.59131 2.94678 3.33228 3.40592 3.43909 3.51381 3.86924 3.90968 4.48287 4.71766 5.00420 5.21060 5.33282 5.34954 5.46304 5.64468 5.92826 5.97007 6.01934 6.17941 6.30442 6.46341 6.70060 6.74585 6.80064 6.96698 7.13383 7.31441 7.36985 7.48700 7.49576 7.83997 8.58488 9.05108 9.62093 11.12908 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040671 B = 0.004626 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.287346 B = 6051.615049 C = 6274.265741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.265 3.735 3 C -0.118 4.118 4 C -0.022 4.022 5 C -0.123 4.123 6 C -0.081 4.081 7 C -0.097 4.097 8 C -0.016 4.016 9 C -0.519 4.519 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.906 5.906 13 Si 0.880 3.120 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.035 4.035 18 C -0.198 4.198 19 C 0.254 3.746 20 N -0.870 5.870 21 H 0.131 0.869 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.011 0.989 27 H 0.015 0.985 28 H 0.262 0.738 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.397 0.603 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 9.005 17.559 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.043 4.043 5 C -0.125 4.125 6 C -0.118 4.118 7 C -0.135 4.135 8 C -0.053 4.053 9 C -0.557 4.557 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.708 3.292 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.055 4.055 18 C -0.220 4.220 19 C 0.145 3.855 20 N -0.408 5.408 21 H 0.149 0.851 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.226 0.774 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.975 8.913 17.390 20.748 hybrid contribution 0.592 -0.530 0.307 0.851 sum -6.383 8.383 17.697 20.596 Atomic orbital electron populations 1.81246 1.12022 1.08028 1.10379 1.25663 0.92604 0.93578 0.93011 1.15491 0.83925 0.99033 1.14262 1.20890 0.93722 0.95643 0.94028 1.19816 0.92910 0.98134 1.01645 1.20732 0.99062 0.94485 0.97557 1.21480 1.00500 1.00102 0.91425 1.19609 0.95152 0.93846 0.96722 1.21186 1.35843 1.06159 0.92558 0.91092 1.25048 0.95631 0.98256 0.94679 1.69922 1.42112 1.36053 1.06416 0.86772 0.78466 0.83979 0.80021 1.20360 1.21503 1.18947 1.21105 1.00282 0.91495 0.92591 1.20506 0.91002 1.01543 1.08979 1.17584 0.91420 0.86207 0.90249 1.42423 1.09246 1.21723 1.67407 0.85069 0.91450 0.91313 0.92646 0.92731 0.97104 0.96632 0.92815 0.85130 0.85362 0.77449 0.76837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.34 18.54 41.84 0.78 -5.56 16 2 C 0.27 3.38 14.09 -22.47 -0.32 3.06 16 3 C -0.12 -1.37 5.76 -106.62 -0.61 -1.98 16 4 C -0.02 -0.27 9.39 -39.19 -0.37 -0.63 16 5 C -0.12 -1.53 5.13 -104.66 -0.54 -2.07 16 6 C -0.08 -1.16 5.34 -27.88 -0.15 -1.31 16 7 C -0.10 -1.82 5.13 -26.73 -0.14 -1.95 16 8 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 9 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 10 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 12 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 13 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 17 C -0.04 -0.38 9.67 -39.54 -0.38 -0.76 16 18 C -0.20 -1.83 9.88 -39.42 -0.39 -2.22 16 19 C 0.25 2.50 6.76 -83.56 -0.56 1.94 16 20 N -0.87 -6.35 8.99 32.57 0.29 -6.05 16 21 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 22 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 23 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.40 2.94 7.69 -40.82 -0.31 2.63 16 32 H 0.40 1.90 8.84 -40.82 -0.36 1.54 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -32.04 284.24 -6.53 -38.56 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.98 Total: -1.18 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -4.00 Total: -19.70 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 1.84 Total: -38.89 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.04 -6.53 -38.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.826 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds