Wall clock time and date at job start Sun Mar 29 2020 21:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48498 * 109.47361 * 270.00188 * 3 2 1 5 5 H 1.48507 * 109.46825 * 30.00625 * 3 2 1 6 6 H 1.48493 * 109.46734 * 149.99959 * 3 2 1 7 7 C 1.37871 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47005 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47178 * 179.97438 * 11 10 9 13 13 C 1.37891 * 120.15218 * 265.02415 * 12 11 10 14 14 C 1.38738 * 120.44928 * 179.97438 * 13 12 11 15 15 C 1.36641 * 120.66788 * 0.04244 * 14 13 12 16 16 C 1.39698 * 119.88650 * 359.95620 * 15 14 13 17 17 N 1.35791 * 133.60476 * 179.97438 * 16 15 14 18 18 C 1.30114 * 109.64350 * 180.02562 * 17 16 15 19 19 N 1.36034 * 110.10898 * 0.02562 * 18 17 16 20 20 H 0.97001 * 126.34850 * 179.97438 * 19 18 17 21 21 C 1.38061 * 107.30576 * 359.97438 * 19 18 17 22 22 H 0.96998 * 120.00241 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47184 * 59.99584 * 9 7 2 24 24 H 1.08998 * 109.47155 * 299.99630 * 9 7 2 25 25 H 1.08992 * 109.47352 * 59.99564 * 10 9 7 26 26 H 1.08998 * 109.46823 * 299.99785 * 10 9 7 27 27 H 1.09001 * 109.47147 * 59.99552 * 11 10 9 28 28 H 1.09006 * 109.46872 * 299.99788 * 11 10 9 29 29 H 1.07994 * 119.77919 * 359.97135 * 13 12 11 30 30 H 1.07997 * 119.66523 * 180.02562 * 14 13 12 31 31 H 1.08005 * 120.05875 * 180.02562 * 15 14 13 32 32 H 1.08003 * 124.94179 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4596 -6.1326 -0.0024 13 6 2.8311 -6.7258 -1.1904 14 6 3.7326 -7.7803 -1.1980 15 6 4.2664 -8.2493 -0.0309 16 6 3.9046 -7.6638 1.1848 17 7 4.2511 -7.8977 2.4768 18 6 3.6263 -7.0630 3.2552 19 7 2.8361 -6.2373 2.5173 20 1 2.2685 -5.5286 2.8584 21 6 2.9918 -6.5951 1.1930 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8713 -3.6047 0.8889 26 1 2.8726 -3.6039 -0.8909 27 1 0.8539 -5.0447 -0.8922 28 1 0.8532 -5.0450 0.8878 29 1 2.4176 -6.3671 -2.1214 30 1 4.0151 -8.2353 -2.1358 31 1 4.9677 -9.0705 -0.0482 32 1 3.7211 -7.0306 4.3305 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:37 Heat of formation + Delta-G solvation = 43.874675 kcal Electronic energy + Delta-G solvation = -14979.053727 eV Core-core repulsion = 12518.125505 eV Total energy + Delta-G solvation = -2460.928222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.98191 -37.50563 -34.93936 -33.15147 -31.89777 -29.89531 -29.20294 -26.74887 -23.77973 -22.53499 -22.13294 -20.69798 -20.03241 -17.83669 -16.83019 -16.24080 -15.56486 -15.08635 -14.61388 -14.51531 -13.76213 -13.44089 -13.35483 -12.54922 -12.21224 -11.92246 -11.53660 -11.46950 -11.22320 -10.84462 -10.82572 -10.56741 -10.38271 -9.96026 -9.76299 -9.35824 -9.13025 -8.39553 -8.27554 -7.84287 -6.04453 -4.07098 1.10112 1.66986 2.90552 3.07154 3.28830 3.35166 3.38641 4.00271 4.33394 4.42427 4.76141 5.09423 5.20392 5.31347 5.43589 5.46363 5.52358 5.81362 5.86239 5.97306 6.11815 6.31672 6.50446 6.60195 6.63484 6.79829 6.83111 6.99011 7.07010 7.41661 7.61837 7.75087 7.92120 7.95172 8.38106 9.00043 9.57472 11.06719 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.005333 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.960317 B = 5248.690869 C = 5562.186264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.084 4.084 12 C -0.055 4.055 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.082 4.082 16 C 0.043 3.957 17 N -0.504 5.504 18 C 0.256 3.744 19 N -0.596 5.596 20 H 0.427 0.573 21 C 0.052 3.948 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.014 0.986 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 -14.112 2.563 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.122 4.122 12 C -0.058 4.058 13 C -0.130 4.130 14 C -0.142 4.142 15 C -0.102 4.102 16 C -0.075 4.075 17 N -0.224 5.224 18 C -0.031 4.031 19 N -0.207 5.207 20 H 0.266 0.734 21 C -0.058 4.058 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.089 -14.665 2.797 15.773 hybrid contribution -0.386 1.998 0.073 2.036 sum 4.703 -12.667 2.870 13.813 Atomic orbital electron populations 1.69958 1.06051 1.26635 1.50874 1.25017 0.94840 0.99250 0.95278 0.86607 0.79841 0.83460 0.78196 1.20576 1.21189 1.19915 1.21255 0.93035 0.91097 1.50599 0.92764 1.19120 0.93938 0.91334 0.97201 1.21626 0.98922 0.92893 1.00513 1.20767 0.96070 0.92831 1.02512 1.19152 0.99170 0.97745 0.89733 1.20838 0.98744 0.96564 0.96863 1.20612 0.98288 0.97723 0.97552 1.19897 1.00752 1.00265 0.89270 1.19062 0.98984 0.97098 0.92345 1.70420 1.25909 1.25480 1.00609 1.25296 0.90487 0.88370 0.98975 1.43214 1.39885 1.31970 1.05627 0.73419 1.18761 1.02210 0.99547 0.85246 0.92980 0.96452 0.96794 0.93885 0.92951 0.90759 0.92166 0.85271 0.85634 0.85860 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.06 5.14 -26.73 -0.14 -2.20 16 11 C -0.08 -1.40 5.36 -27.88 -0.15 -1.55 16 12 C -0.06 -0.86 5.14 -104.55 -0.54 -1.40 16 13 C -0.11 -1.53 9.67 -39.52 -0.38 -1.92 16 14 C -0.12 -1.53 9.96 -39.97 -0.40 -1.93 16 15 C -0.08 -1.14 10.05 -39.61 -0.40 -1.53 16 16 C 0.04 0.68 7.23 -84.70 -0.61 0.07 16 17 N -0.50 -7.56 11.27 -12.05 -0.14 -7.70 16 18 C 0.26 2.99 12.97 -89.78 -1.16 1.82 16 19 N -0.60 -7.60 6.23 -11.76 -0.07 -7.67 16 20 H 0.43 4.60 8.96 -40.82 -0.37 4.23 16 21 C 0.05 0.81 7.00 -83.99 -0.59 0.22 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 28 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.21 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 279.68 15.07 4.21 4.21 Total: -1.00 -32.91 279.68 -9.32 -42.23 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.13 Total: -0.18 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -4.92 Total: -21.50 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.53 Total: -41.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.91 -9.32 -42.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.107 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds