Wall clock time and date at job start Sun Mar 29 2020 21:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48498 * 109.47361 * 270.00188 * 3 2 1 5 5 H 1.48507 * 109.46825 * 30.00625 * 3 2 1 6 6 H 1.48493 * 109.46734 * 149.99959 * 3 2 1 7 7 C 1.37871 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47005 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47178 * 179.97438 * 11 10 9 13 13 C 1.37891 * 120.15218 * 265.02415 * 12 11 10 14 14 C 1.38738 * 120.44928 * 179.97438 * 13 12 11 15 15 C 1.36641 * 120.66788 * 0.04244 * 14 13 12 16 16 C 1.39698 * 119.88650 * 359.95620 * 15 14 13 17 17 N 1.35791 * 133.60476 * 179.97438 * 16 15 14 18 18 C 1.30114 * 109.64350 * 180.02562 * 17 16 15 19 19 N 1.36034 * 110.10898 * 0.02562 * 18 17 16 20 20 H 0.97001 * 126.34850 * 179.97438 * 19 18 17 21 21 C 1.38061 * 107.30576 * 359.97438 * 19 18 17 22 22 H 0.96998 * 120.00241 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47184 * 59.99584 * 9 7 2 24 24 H 1.08998 * 109.47155 * 299.99630 * 9 7 2 25 25 H 1.08992 * 109.47352 * 59.99564 * 10 9 7 26 26 H 1.08998 * 109.46823 * 299.99785 * 10 9 7 27 27 H 1.09001 * 109.47147 * 59.99552 * 11 10 9 28 28 H 1.09006 * 109.46872 * 299.99788 * 11 10 9 29 29 H 1.07994 * 119.77919 * 359.97135 * 13 12 11 30 30 H 1.07997 * 119.66523 * 180.02562 * 14 13 12 31 31 H 1.08005 * 120.05875 * 180.02562 * 15 14 13 32 32 H 1.08003 * 124.94179 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4596 -6.1326 -0.0024 13 6 2.8311 -6.7258 -1.1904 14 6 3.7326 -7.7803 -1.1980 15 6 4.2664 -8.2493 -0.0309 16 6 3.9046 -7.6638 1.1848 17 7 4.2511 -7.8977 2.4768 18 6 3.6263 -7.0630 3.2552 19 7 2.8361 -6.2373 2.5173 20 1 2.2685 -5.5286 2.8584 21 6 2.9918 -6.5951 1.1930 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8713 -3.6047 0.8889 26 1 2.8726 -3.6039 -0.8909 27 1 0.8539 -5.0447 -0.8922 28 1 0.8532 -5.0450 0.8878 29 1 2.4176 -6.3671 -2.1214 30 1 4.0151 -8.2353 -2.1358 31 1 4.9677 -9.0705 -0.0482 32 1 3.7211 -7.0306 4.3305 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:36 Heat of formation + Delta-G solvation = 25.145826 kcal Electronic energy + Delta-G solvation = -14979.865871 eV Core-core repulsion = 12518.125505 eV Total energy + Delta-G solvation = -2461.740366 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.99872 -38.60381 -36.49066 -34.83446 -33.36127 -31.33123 -30.22633 -28.41030 -25.48133 -23.62494 -23.21591 -22.24256 -21.38305 -18.91745 -18.43723 -17.76112 -16.64414 -16.50124 -16.12045 -15.90819 -15.04935 -14.78900 -14.45770 -14.27931 -13.91328 -13.25715 -12.89794 -12.86818 -12.69239 -12.53997 -12.35665 -12.27933 -11.64991 -11.49745 -11.38979 -11.19894 -10.84605 -10.57420 -9.31787 -8.94931 -8.22129 -6.33373 0.05880 0.61509 1.38536 1.39242 1.50309 1.90530 2.13040 2.39039 2.92845 3.10850 3.42091 3.73499 3.99715 4.14724 4.29772 4.42314 4.49209 4.52820 4.59215 4.74137 4.90324 4.97292 5.15094 5.16712 5.25828 5.49813 5.53725 5.59775 5.64285 5.75168 5.83244 6.00257 6.23526 6.50004 6.83209 6.92200 7.36117 8.89125 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.005333 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.960317 B = 5248.690869 C = 5562.186264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.085 4.085 11 C -0.071 4.071 12 C -0.075 4.075 13 C -0.114 4.114 14 C -0.116 4.116 15 C -0.091 4.091 16 C 0.019 3.981 17 N -0.538 5.538 18 C 0.271 3.729 19 N -0.597 5.597 20 H 0.434 0.566 21 C 0.031 3.969 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 -14.365 2.718 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.122 4.122 11 C -0.109 4.109 12 C -0.078 4.078 13 C -0.134 4.134 14 C -0.136 4.136 15 C -0.111 4.111 16 C -0.099 4.099 17 N -0.259 5.259 18 C -0.016 4.016 19 N -0.208 5.208 20 H 0.274 0.726 21 C -0.079 4.079 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.176 0.824 31 H 0.157 0.843 32 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 6.187 -14.923 2.952 16.423 hybrid contribution -0.733 2.031 0.053 2.160 sum 5.454 -12.893 3.004 14.318 Atomic orbital electron populations 1.70078 1.07666 1.27794 1.51592 1.25921 0.95741 1.03154 0.94682 0.85503 0.78648 0.78694 0.78558 1.19749 1.20536 1.19033 1.21682 0.93352 0.92611 1.50686 0.92723 1.19023 0.94320 0.92743 0.95111 1.21360 0.97734 0.93042 1.00114 1.20540 0.96029 0.91487 1.02811 1.19088 0.99898 0.98118 0.90709 1.21145 0.98654 0.96665 0.96893 1.20943 0.97143 0.96911 0.98582 1.20255 1.00998 1.00643 0.89182 1.19491 0.99484 0.97605 0.93314 1.70425 1.27584 1.27186 1.00712 1.26257 0.88314 0.86452 1.00551 1.43313 1.40160 1.32340 1.04997 0.72578 1.18949 1.02724 1.00083 0.86161 0.92705 0.98668 0.98675 0.94110 0.93354 0.90470 0.91936 0.83865 0.82353 0.84280 0.72353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.44 0.28 -55.76 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.08 -3.46 5.14 30.60 0.16 -3.30 16 11 C -0.07 -2.36 5.36 29.85 0.16 -2.20 16 12 C -0.08 -2.29 5.14 -19.81 -0.10 -2.39 16 13 C -0.11 -3.01 9.67 22.31 0.22 -2.80 16 14 C -0.12 -2.68 9.96 22.02 0.22 -2.46 16 15 C -0.09 -2.39 10.05 22.25 0.22 -2.16 16 16 C 0.02 0.57 7.23 39.45 0.29 0.86 16 17 N -0.54 -15.50 11.27 -192.03 -2.16 -17.66 16 18 C 0.27 5.82 12.97 180.06 2.33 8.15 16 19 N -0.60 -14.57 6.23 -191.12 -1.19 -15.76 16 20 H 0.43 8.97 8.96 -92.71 -0.83 8.14 16 21 C 0.03 0.94 7.00 38.86 0.27 1.21 16 22 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 23 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.48 8.05 -2.39 -0.02 2.46 16 28 H 0.06 2.00 8.12 -2.38 -0.02 1.98 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.26 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -70.88 279.68 3.85 -67.02 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.29 Total: 9.88 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 4.61 Total: -33.79 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -3.07 Total: -89.18 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.88 3.85 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.170 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds