Wall clock time and date at job start Sun Mar 29 2020 21:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47211 * 269.99861 * 3 2 1 5 5 H 1.48495 * 109.47137 * 30.00258 * 3 2 1 6 6 H 1.48504 * 109.46841 * 150.00294 * 3 2 1 7 7 C 1.37885 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99665 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99823 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47139 * 179.97438 * 11 10 9 13 13 C 1.40809 * 119.68970 * 269.98165 * 12 11 10 14 14 C 1.35879 * 119.76985 * 180.02562 * 13 12 11 15 15 C 1.40974 * 119.17792 * 359.97438 * 14 13 12 16 16 C 1.37991 * 133.71469 * 180.02562 * 15 14 13 17 17 N 1.33401 * 107.46326 * 179.72539 * 16 15 14 18 18 C 1.30901 * 109.86951 * 0.42694 * 17 16 15 19 19 N 1.35040 * 109.37236 * 359.56482 * 18 17 16 20 20 C 1.34667 * 119.68772 * 90.00175 * 12 11 10 21 21 H 0.97004 * 120.00157 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47299 * 59.99920 * 9 7 2 23 23 H 1.09001 * 109.47106 * 299.99793 * 9 7 2 24 24 H 1.08997 * 109.46710 * 60.00279 * 10 9 7 25 25 H 1.09001 * 109.47044 * 299.99899 * 10 9 7 26 26 H 1.09007 * 109.47207 * 60.00090 * 11 10 9 27 27 H 1.08997 * 109.47910 * 300.00254 * 11 10 9 28 28 H 1.07998 * 120.12032 * 0.04424 * 13 12 11 29 29 H 1.08000 * 120.41524 * 179.97438 * 14 13 12 30 30 H 1.08008 * 126.26536 * 359.97438 * 16 15 14 31 31 H 1.08002 * 125.31719 * 179.83472 * 18 17 16 32 32 H 1.08006 * 119.72049 * 359.95519 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 6 6.0538 -4.0576 -0.0015 13 6 6.2876 -4.7140 1.2221 14 6 6.7410 -5.9949 1.2247 15 6 6.9693 -6.6456 -0.0049 16 6 7.4144 -7.9057 -0.3487 17 7 7.4304 -7.9750 -1.6808 18 6 7.0329 -6.8366 -2.1903 19 7 6.7316 -5.9795 -1.1912 20 6 6.2752 -4.6873 -1.1710 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6805 0.8889 23 1 3.8744 -0.6802 -0.8912 24 1 3.6577 -3.1506 -0.8907 25 1 3.6584 -3.1503 0.8893 26 1 5.9155 -2.1225 0.8873 27 1 5.9141 -2.1232 -0.8926 28 1 6.1069 -4.2013 2.1553 29 1 6.9243 -6.5081 2.1571 30 1 7.6942 -8.6932 0.3355 31 1 6.9537 -6.6184 -3.2451 32 1 6.0905 -4.1701 -2.1010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:22 Heat of formation + Delta-G solvation = 67.306098 kcal Electronic energy + Delta-G solvation = -14791.228224 eV Core-core repulsion = 12331.316064 eV Total energy + Delta-G solvation = -2459.912160 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.75018 -38.04476 -34.72890 -33.37741 -32.57604 -30.67520 -28.32011 -27.12528 -24.10497 -23.08846 -21.90920 -21.22927 -20.16012 -17.92941 -16.81304 -16.60210 -15.80656 -15.52721 -14.70820 -14.37111 -14.07362 -13.93123 -13.47438 -13.05999 -12.46830 -12.17998 -11.98132 -11.66744 -11.47952 -11.05734 -10.82923 -10.74948 -10.31996 -10.00351 -9.84592 -9.77777 -9.26421 -8.96228 -8.58502 -7.50660 -6.08543 -4.07164 0.80076 1.26751 2.62788 3.04346 3.26462 3.34391 3.36784 3.39672 4.40471 4.40674 4.56307 4.68864 4.84025 4.91259 5.00795 5.25106 5.40483 5.45889 5.59739 5.74829 5.82598 6.06417 6.09400 6.19537 6.43637 6.54523 6.55883 6.60337 6.80392 7.16158 7.22638 7.34914 7.74324 7.83216 8.49212 8.96421 9.53544 11.04991 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.004590 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.842839 B = 6099.077952 C = 6178.688748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.097 4.097 11 C -0.079 4.079 12 C -0.076 4.076 13 C -0.110 4.110 14 C -0.081 4.081 15 C -0.002 4.002 16 C -0.030 4.030 17 N -0.459 5.459 18 C 0.131 3.869 19 N -0.360 5.360 20 C 0.033 3.967 21 H 0.263 0.737 22 H 0.016 0.984 23 H 0.012 0.988 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.177 0.823 31 H 0.208 0.792 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.426 -9.329 0.325 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.079 4.079 13 C -0.131 4.131 14 C -0.101 4.101 15 C -0.112 4.112 16 C -0.185 4.185 17 N -0.173 5.173 18 C -0.144 4.144 19 N -0.030 5.030 20 C -0.086 4.086 21 H 0.073 0.927 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.195 0.805 31 H 0.225 0.775 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 15.491 -9.874 -0.325 18.373 hybrid contribution -0.026 1.633 0.368 1.674 sum 15.464 -8.241 0.043 17.523 Atomic orbital electron populations 1.69917 1.06346 1.26929 1.51040 1.25049 0.94729 0.99211 0.94539 0.86766 0.80340 0.83596 0.78497 1.20304 1.21374 1.18995 1.21145 0.89534 0.94466 1.50937 0.91105 1.19593 0.97197 0.92050 0.96308 1.21489 0.90294 1.00109 1.01548 1.20782 0.98392 0.89390 1.03173 1.19771 0.98286 0.98255 0.91547 1.21116 0.99117 0.94588 0.98267 1.20494 0.99625 0.94641 0.95305 1.19765 1.09410 0.95277 0.86729 1.22463 1.09018 0.95202 0.91784 1.69959 1.16918 1.21164 1.09247 1.24800 1.09031 0.85654 0.94903 1.42891 1.41039 1.10618 1.08413 1.21469 1.03365 0.83101 1.00709 0.92703 0.96523 0.97019 0.92711 0.92453 0.90506 0.90965 0.84394 0.83770 0.80548 0.77536 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.76 5.14 -26.73 -0.14 -1.90 16 11 C -0.08 -1.10 5.32 -27.88 -0.15 -1.25 16 12 C -0.08 -0.97 5.10 -104.91 -0.54 -1.51 16 13 C -0.11 -1.30 9.73 -39.46 -0.38 -1.68 16 14 C -0.08 -0.91 10.11 -39.39 -0.40 -1.31 16 15 C 0.00 -0.03 6.80 -84.09 -0.57 -0.60 16 16 C -0.03 -0.38 12.02 -16.96 -0.20 -0.58 16 17 N -0.46 -6.47 11.19 -13.95 -0.16 -6.63 16 18 C 0.13 1.63 12.75 -90.04 -1.15 0.48 16 19 N -0.36 -4.72 2.94 -62.43 -0.18 -4.90 16 20 C 0.03 0.41 10.57 -16.48 -0.17 0.23 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 23 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 27 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.21 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 276.83 15.07 4.17 4.17 Total: -1.00 -32.53 276.83 -8.46 -40.98 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.15 Total: -1.59 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -4.24 Total: -21.72 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.43 Total: -38.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.53 -8.46 -40.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.291 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds