Wall clock time and date at job start Sun Mar 29 2020 21:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47211 * 269.99861 * 3 2 1 5 5 H 1.48495 * 109.47137 * 30.00258 * 3 2 1 6 6 H 1.48504 * 109.46841 * 150.00294 * 3 2 1 7 7 C 1.37885 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99665 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99823 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47139 * 179.97438 * 11 10 9 13 13 C 1.40809 * 119.68970 * 269.98165 * 12 11 10 14 14 C 1.35879 * 119.76985 * 180.02562 * 13 12 11 15 15 C 1.40974 * 119.17792 * 359.97438 * 14 13 12 16 16 C 1.37991 * 133.71469 * 180.02562 * 15 14 13 17 17 N 1.33401 * 107.46326 * 179.72539 * 16 15 14 18 18 C 1.30901 * 109.86951 * 0.42694 * 17 16 15 19 19 N 1.35040 * 109.37236 * 359.56482 * 18 17 16 20 20 C 1.34667 * 119.68772 * 90.00175 * 12 11 10 21 21 H 0.97004 * 120.00157 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47299 * 59.99920 * 9 7 2 23 23 H 1.09001 * 109.47106 * 299.99793 * 9 7 2 24 24 H 1.08997 * 109.46710 * 60.00279 * 10 9 7 25 25 H 1.09001 * 109.47044 * 299.99899 * 10 9 7 26 26 H 1.09007 * 109.47207 * 60.00090 * 11 10 9 27 27 H 1.08997 * 109.47910 * 300.00254 * 11 10 9 28 28 H 1.07998 * 120.12032 * 0.04424 * 13 12 11 29 29 H 1.08000 * 120.41524 * 179.97438 * 14 13 12 30 30 H 1.08008 * 126.26536 * 359.97438 * 16 15 14 31 31 H 1.08002 * 125.31719 * 179.83472 * 18 17 16 32 32 H 1.08006 * 119.72049 * 359.95519 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 6 6.0538 -4.0576 -0.0015 13 6 6.2876 -4.7140 1.2221 14 6 6.7410 -5.9949 1.2247 15 6 6.9693 -6.6456 -0.0049 16 6 7.4144 -7.9057 -0.3487 17 7 7.4304 -7.9750 -1.6808 18 6 7.0329 -6.8366 -2.1903 19 7 6.7316 -5.9795 -1.1912 20 6 6.2752 -4.6873 -1.1710 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6805 0.8889 23 1 3.8744 -0.6802 -0.8912 24 1 3.6577 -3.1506 -0.8907 25 1 3.6584 -3.1503 0.8893 26 1 5.9155 -2.1225 0.8873 27 1 5.9141 -2.1232 -0.8926 28 1 6.1069 -4.2013 2.1553 29 1 6.9243 -6.5081 2.1571 30 1 7.6942 -8.6932 0.3355 31 1 6.9537 -6.6184 -3.2451 32 1 6.0905 -4.1701 -2.1010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:22 Heat of formation + Delta-G solvation = 49.925590 kcal Electronic energy + Delta-G solvation = -14791.981899 eV Core-core repulsion = 12331.316064 eV Total energy + Delta-G solvation = -2460.665835 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.67645 -39.02447 -36.23628 -34.48099 -34.21309 -32.12289 -29.39863 -28.47771 -25.50624 -24.13072 -22.90814 -22.44926 -21.66329 -18.94725 -18.77420 -17.56026 -16.76980 -16.58266 -16.23457 -15.53135 -15.49032 -15.03103 -14.80490 -14.35083 -14.10116 -13.38298 -13.28039 -13.07915 -12.70658 -12.40301 -12.33274 -11.76411 -11.68017 -11.50074 -11.42069 -11.30126 -11.26813 -10.74794 -10.01789 -8.41911 -8.27980 -6.32711 -0.08914 0.32291 1.38506 1.40697 1.52602 1.72357 2.09196 2.38233 2.47919 3.08003 3.52116 3.70296 3.80169 3.97210 4.01638 4.11715 4.31269 4.44862 4.57034 4.59614 4.85857 4.90978 4.98585 5.10970 5.12064 5.24535 5.39892 5.55660 5.58240 5.67098 5.68170 5.73108 6.24970 6.30538 6.76647 6.88947 7.32314 8.89214 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.004590 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.842839 B = 6099.077952 C = 6178.688748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.536 4.536 8 H 0.025 0.975 9 C -0.013 4.013 10 C -0.089 4.089 11 C -0.066 4.066 12 C -0.087 4.087 13 C -0.122 4.122 14 C -0.079 4.079 15 C -0.022 4.022 16 C -0.040 4.040 17 N -0.489 5.489 18 C 0.127 3.873 19 N -0.369 5.369 20 C 0.028 3.972 21 H 0.265 0.735 22 H 0.025 0.975 23 H 0.024 0.976 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.199 0.801 31 H 0.237 0.763 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.704 -8.525 0.478 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.050 4.050 10 C -0.127 4.127 11 C -0.103 4.103 12 C -0.090 4.090 13 C -0.143 4.143 14 C -0.098 4.098 15 C -0.132 4.132 16 C -0.194 4.194 17 N -0.203 5.203 18 C -0.148 4.148 19 N -0.039 5.039 20 C -0.091 4.091 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.216 0.784 31 H 0.253 0.747 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 17.791 -9.092 -0.165 19.981 hybrid contribution -0.801 1.255 0.301 1.519 sum 16.990 -7.837 0.137 18.711 Atomic orbital electron populations 1.70092 1.08576 1.28179 1.52870 1.26114 0.95617 1.03860 0.94083 0.85587 0.79652 0.77715 0.79253 1.19128 1.21382 1.16227 1.21576 0.92670 0.92835 1.50295 0.95635 1.19569 0.93353 0.95124 0.96997 1.21310 0.93762 0.97032 1.00553 1.20579 0.94626 0.90534 1.04602 1.19747 0.99073 0.97861 0.92274 1.21353 0.99325 0.94993 0.98616 1.20836 0.98648 0.94524 0.95839 1.20172 1.09850 0.95652 0.87505 1.22935 1.08702 0.95890 0.91846 1.69967 1.18088 1.22178 1.10047 1.25446 1.08011 0.85223 0.96092 1.43053 1.41252 1.10928 1.08665 1.21795 1.02787 0.82976 1.01552 0.92585 0.95639 0.95778 0.93767 0.93621 0.89246 0.89444 0.82849 0.80952 0.78396 0.74716 0.79915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 3 Si 0.96 42.94 27.47 68.60 1.88 44.82 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 7 C -0.54 -30.46 9.66 25.60 0.25 -30.22 16 8 H 0.03 1.62 7.99 -2.91 -0.02 1.59 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.13 5.14 30.59 0.16 -2.98 16 11 C -0.07 -1.64 5.32 29.85 0.16 -1.48 16 12 C -0.09 -2.04 5.10 -20.05 -0.10 -2.15 16 13 C -0.12 -2.62 9.73 22.35 0.22 -2.41 16 14 C -0.08 -1.62 10.11 22.39 0.23 -1.39 16 15 C -0.02 -0.55 6.80 38.77 0.26 -0.29 16 16 C -0.04 -0.96 12.02 84.40 1.01 0.05 16 17 N -0.49 -13.25 11.19 -198.04 -2.22 -15.47 16 18 C 0.13 2.99 12.75 180.15 2.30 5.28 16 19 N -0.37 -9.10 2.94 -351.43 -1.03 -10.14 16 20 C 0.03 0.64 10.57 83.06 0.88 1.52 16 21 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 22 H 0.03 1.07 7.20 -2.38 -0.02 1.05 16 23 H 0.02 0.99 7.57 -2.39 -0.02 0.98 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 26 H 0.09 2.03 8.09 -2.38 -0.02 2.01 16 27 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 28 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.24 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -71.38 276.83 5.91 -65.47 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.04 Total: 9.13 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 5.94 Total: -34.07 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.95 Total: -85.35 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -71.38 5.91 -65.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.391 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds