Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47494 * 270.00380 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00826 * 3 2 1 6 6 H 1.48504 * 109.46507 * 150.00403 * 3 2 1 7 7 C 1.38811 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00342 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99772 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00216 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47257 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46430 * 60.00360 * 11 10 9 13 13 O 1.42893 * 109.47124 * 300.00282 * 11 10 9 14 14 C 1.53002 * 109.46740 * 179.97438 * 11 10 9 15 15 N 1.46908 * 109.46707 * 185.00019 * 14 11 10 16 16 C 1.47024 * 110.99261 * 46.32476 * 15 14 11 17 17 C 1.53103 * 109.24985 * 182.34870 * 16 15 14 18 18 O 1.43012 * 109.29295 * 303.21723 * 17 16 15 19 19 C 1.43011 * 113.74271 * 58.65008 * 18 17 16 20 20 C 1.47018 * 110.99661 * 170.00016 * 15 14 11 21 21 H 0.97005 * 120.00305 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99589 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.46879 * 59.99624 * 10 9 7 24 24 H 1.09004 * 109.47109 * 300.00127 * 10 9 7 25 25 H 0.96706 * 114.00076 * 299.99720 * 13 11 10 26 26 H 1.09003 * 109.46906 * 65.00534 * 14 11 10 27 27 H 1.08999 * 109.47302 * 305.00033 * 14 11 10 28 28 H 1.08998 * 109.47369 * 62.43595 * 16 15 14 29 29 H 1.08998 * 109.54483 * 302.29802 * 16 15 14 30 30 H 1.09002 * 109.50635 * 183.25881 * 17 16 15 31 31 H 1.09003 * 109.50698 * 63.17493 * 17 16 15 32 32 H 1.08997 * 109.50806 * 61.26171 * 19 18 17 33 33 H 1.08997 * 109.50924 * 181.35636 * 19 18 17 34 34 H 1.08994 * 109.50209 * 57.67478 * 20 15 14 35 35 H 1.08997 * 109.50514 * 297.54292 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8803 -1.6193 0.8872 13 8 5.9607 -1.4424 -1.1696 14 6 6.3813 -3.5163 -0.0017 15 7 7.8212 -3.2504 0.1178 16 6 8.0889 -2.2660 1.1766 17 6 9.5912 -1.9752 1.2273 18 8 10.3027 -3.1988 1.4318 19 6 10.0655 -4.1793 0.4181 20 6 8.5681 -4.4933 0.3598 21 1 -0.4851 0.8401 0.0004 22 1 3.8646 -0.3621 -0.0014 23 1 3.8484 -3.0426 -0.8908 24 1 3.8492 -3.0422 0.8892 25 1 5.7533 -1.8916 -2.0005 26 1 6.1862 -4.0489 -0.9326 27 1 6.0531 -4.1249 0.8408 28 1 7.7632 -2.6670 2.1363 29 1 7.5469 -1.3447 0.9634 30 1 9.8018 -1.2900 2.0484 31 1 9.9065 -1.5237 0.2866 32 1 10.3940 -3.7923 -0.5465 33 1 10.6195 -5.0879 0.6537 34 1 8.3751 -5.1973 -0.4495 35 1 8.2508 -4.9301 1.3066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251032737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = -70.291161 kcal Electronic energy + Delta-G solvation = -16608.361420 eV Core-core repulsion = 13835.173676 eV Total energy + Delta-G solvation = -2773.187744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83239 -37.75949 -35.31835 -34.14255 -31.51944 -31.33234 -29.83740 -27.26527 -24.56448 -24.20466 -22.00077 -21.22204 -20.34694 -17.74662 -16.85829 -16.38016 -15.84311 -15.69754 -15.24403 -15.02271 -14.50061 -14.49444 -13.92679 -13.41899 -13.21443 -12.60253 -12.46110 -12.23672 -11.88606 -11.60266 -11.51679 -11.25339 -10.85244 -10.74605 -10.49251 -10.14267 -9.85634 -9.65456 -9.45510 -8.92380 -8.47363 -7.24765 -5.77764 -3.13509 3.40626 3.46031 3.47465 3.55712 3.73137 4.58556 4.60853 4.68852 4.79416 4.83985 4.97558 5.08950 5.12793 5.22148 5.37353 5.45451 5.50859 5.51487 5.57666 5.60367 5.76938 5.83220 5.84999 5.91742 6.42363 6.59014 6.80432 6.82364 6.96767 7.93806 8.02116 8.41132 9.21102 9.93336 10.13644 11.40412 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.050355 B = 0.005437 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.917024 B = 5149.050549 C = 5464.446805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.129 3.871 11 C 0.093 3.907 12 H 0.099 0.901 13 O -0.548 6.548 14 C 0.026 3.974 15 N -0.527 5.527 16 C 0.009 3.991 17 C 0.065 3.935 18 O -0.389 6.389 19 C 0.065 3.935 20 C 0.016 3.984 21 H 0.260 0.740 22 H 0.366 0.634 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.373 0.627 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.749 -8.081 0.506 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.106 0.894 9 N -0.396 5.396 10 C 0.000 4.000 11 C 0.033 3.967 12 H 0.117 0.883 13 O -0.353 6.353 14 C -0.102 4.102 15 N -0.252 5.252 16 C -0.119 4.119 17 C -0.012 4.012 18 O -0.308 6.308 19 C -0.012 4.012 20 C -0.113 4.113 21 H 0.070 0.930 22 H 0.200 0.800 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.220 0.780 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.994 -7.565 0.669 21.387 hybrid contribution -0.303 0.346 0.172 0.491 sum 19.691 -7.219 0.841 20.989 Atomic orbital electron populations 1.69709 1.05150 1.25925 1.57409 1.24664 0.95235 0.97319 1.01788 0.86494 0.79108 0.84663 0.77948 1.20938 1.21794 1.20288 1.19050 0.80594 0.94736 1.43400 0.89356 1.42573 1.03895 1.02105 1.90981 1.21239 0.89375 0.90151 0.99230 1.22306 0.93588 0.91014 0.89765 0.88349 1.86538 1.86128 1.47090 1.15529 1.22859 0.86961 0.98411 1.01980 1.62207 1.07993 1.09952 1.45066 1.22939 0.97663 0.98135 0.93131 1.22680 0.90100 0.86301 1.02128 1.87961 1.68731 1.25228 1.48858 1.22633 0.94285 0.92294 0.92012 1.22813 0.95085 0.92478 1.00904 0.93020 0.80028 0.95314 0.95081 0.77986 0.89932 0.93663 0.94093 0.88281 0.88517 0.92129 0.92293 0.88673 0.89713 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.89 22.73 27.74 -169.99 -4.71 18.02 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 7 C -0.25 -7.15 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -18.16 5.30 -59.91 -0.32 -18.48 16 10 C 0.13 2.43 5.92 -4.04 -0.02 2.41 16 11 C 0.09 1.42 2.44 -26.73 -0.07 1.35 16 12 H 0.10 1.57 5.95 -51.93 -0.31 1.26 16 13 O -0.55 -8.75 13.03 -35.23 -0.46 -9.21 16 14 C 0.03 0.32 4.92 -3.82 -0.02 0.31 16 15 N -0.53 -6.31 4.82 -234.29 -1.13 -7.44 16 16 C 0.01 0.11 4.94 -3.70 -0.02 0.09 16 17 C 0.06 0.70 7.01 37.21 0.26 0.96 16 18 O -0.39 -4.58 10.83 -35.23 -0.38 -4.97 16 19 C 0.06 0.62 7.01 37.21 0.26 0.88 16 20 C 0.02 0.16 5.63 -3.71 -0.02 0.14 16 21 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 22 H 0.37 8.90 5.41 -40.82 -0.22 8.68 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.37 4.92 9.05 45.56 0.41 5.34 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 1.29 5.94 -51.93 -0.31 0.98 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 282.47 15.07 4.26 4.26 Total: -1.00 -33.13 282.47 -6.51 -39.64 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.66 Total: 8.17 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 0.12 Total: -1.09 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.67 Total: -54.82 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.84 Total: -14.18 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.13 -6.51 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251032737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.652 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds