Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47494 * 270.00380 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00826 * 3 2 1 6 6 H 1.48504 * 109.46507 * 150.00403 * 3 2 1 7 7 C 1.38811 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00342 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99772 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00216 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47257 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46430 * 60.00360 * 11 10 9 13 13 O 1.42893 * 109.47124 * 300.00282 * 11 10 9 14 14 C 1.53002 * 109.46740 * 179.97438 * 11 10 9 15 15 N 1.46908 * 109.46707 * 185.00019 * 14 11 10 16 16 C 1.47024 * 110.99261 * 46.32476 * 15 14 11 17 17 C 1.53103 * 109.24985 * 182.34870 * 16 15 14 18 18 O 1.43012 * 109.29295 * 303.21723 * 17 16 15 19 19 C 1.43011 * 113.74271 * 58.65008 * 18 17 16 20 20 C 1.47018 * 110.99661 * 170.00016 * 15 14 11 21 21 H 0.97005 * 120.00305 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99589 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.46879 * 59.99624 * 10 9 7 24 24 H 1.09004 * 109.47109 * 300.00127 * 10 9 7 25 25 H 0.96706 * 114.00076 * 299.99720 * 13 11 10 26 26 H 1.09003 * 109.46906 * 65.00534 * 14 11 10 27 27 H 1.08999 * 109.47302 * 305.00033 * 14 11 10 28 28 H 1.08998 * 109.47369 * 62.43595 * 16 15 14 29 29 H 1.08998 * 109.54483 * 302.29802 * 16 15 14 30 30 H 1.09002 * 109.50635 * 183.25881 * 17 16 15 31 31 H 1.09003 * 109.50698 * 63.17493 * 17 16 15 32 32 H 1.08997 * 109.50806 * 61.26171 * 19 18 17 33 33 H 1.08997 * 109.50924 * 181.35636 * 19 18 17 34 34 H 1.08994 * 109.50209 * 57.67478 * 20 15 14 35 35 H 1.08997 * 109.50514 * 297.54292 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8803 -1.6193 0.8872 13 8 5.9607 -1.4424 -1.1696 14 6 6.3813 -3.5163 -0.0017 15 7 7.8212 -3.2504 0.1178 16 6 8.0889 -2.2660 1.1766 17 6 9.5912 -1.9752 1.2273 18 8 10.3027 -3.1988 1.4318 19 6 10.0655 -4.1793 0.4181 20 6 8.5681 -4.4933 0.3598 21 1 -0.4851 0.8401 0.0004 22 1 3.8646 -0.3621 -0.0014 23 1 3.8484 -3.0426 -0.8908 24 1 3.8492 -3.0422 0.8892 25 1 5.7533 -1.8916 -2.0005 26 1 6.1862 -4.0489 -0.9326 27 1 6.0531 -4.1249 0.8408 28 1 7.7632 -2.6670 2.1363 29 1 7.5469 -1.3447 0.9634 30 1 9.8018 -1.2900 2.0484 31 1 9.9065 -1.5237 0.2866 32 1 10.3940 -3.7923 -0.5465 33 1 10.6195 -5.0879 0.6537 34 1 8.3751 -5.1973 -0.4495 35 1 8.2508 -4.9301 1.3066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251032737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = -99.008392 kcal Electronic energy + Delta-G solvation = -16609.606692 eV Core-core repulsion = 13835.173676 eV Total energy + Delta-G solvation = -2774.433017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73537 -38.94407 -36.51033 -35.83152 -33.48626 -32.20030 -31.15777 -28.54729 -25.98574 -25.11013 -23.65961 -22.52609 -21.25972 -19.81241 -17.94362 -17.32249 -16.90274 -16.79498 -16.54151 -16.12759 -16.01788 -15.53864 -15.29497 -14.86494 -14.70821 -14.19478 -13.90258 -13.31967 -13.12074 -12.95540 -12.79568 -12.60487 -12.32537 -12.16916 -11.86904 -11.62545 -11.49262 -11.05030 -10.90468 -10.59141 -9.39488 -9.32556 -8.06198 -5.39596 1.37762 1.40333 1.47661 2.46221 2.64731 2.94930 3.25075 3.39991 3.62932 3.90962 3.93145 4.02079 4.13368 4.17396 4.19497 4.32826 4.37177 4.56884 4.62246 4.72431 4.73706 4.81392 4.88513 4.91222 5.01339 5.20535 5.70518 5.87865 5.95767 6.17177 6.17985 6.87757 7.05313 7.81211 8.00029 9.15192 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.050355 B = 0.005437 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.917024 B = 5149.050549 C = 5464.446805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.754 5.754 10 C 0.124 3.876 11 C 0.108 3.892 12 H 0.093 0.907 13 O -0.560 6.560 14 C 0.036 3.964 15 N -0.534 5.534 16 C 0.009 3.991 17 C 0.067 3.933 18 O -0.405 6.405 19 C 0.062 3.938 20 C 0.015 3.985 21 H 0.259 0.741 22 H 0.368 0.632 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.385 0.615 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.012 -8.257 0.297 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.370 4.370 8 H 0.076 0.924 9 N -0.400 5.400 10 C -0.004 4.004 11 C 0.048 3.952 12 H 0.110 0.890 13 O -0.367 6.367 14 C -0.093 4.093 15 N -0.259 5.259 16 C -0.119 4.119 17 C -0.010 4.010 18 O -0.324 6.324 19 C -0.015 4.015 20 C -0.112 4.112 21 H 0.068 0.932 22 H 0.201 0.799 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.234 0.766 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.307 -7.781 0.453 23.630 hybrid contribution -1.006 0.271 0.220 1.064 sum 21.302 -7.510 0.672 22.597 Atomic orbital electron populations 1.69878 1.07075 1.26804 1.59508 1.25476 0.96083 1.01201 1.02418 0.85379 0.78352 0.79662 0.78159 1.20425 1.22003 1.18220 1.19062 0.82686 0.93565 1.41683 0.92406 1.42588 1.02379 1.04135 1.90884 1.21468 0.91576 0.88001 0.99310 1.22085 0.91107 0.92454 0.89550 0.88960 1.86513 1.86018 1.47880 1.16263 1.22711 0.87110 0.96536 1.02911 1.62233 1.07610 1.10929 1.45143 1.22910 0.98385 0.97677 0.92893 1.22710 0.89188 0.86412 1.02718 1.87944 1.68915 1.25759 1.49805 1.22812 0.94175 0.92726 0.91758 1.22896 0.95120 0.91831 1.01395 0.93206 0.79893 0.94620 0.95029 0.76615 0.88506 0.93337 0.94616 0.89438 0.87204 0.92179 0.92052 0.86462 0.87991 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.53 13.97 21.65 0.30 -63.23 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 3 Si 0.96 46.77 27.74 68.60 1.90 48.68 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 7 C -0.24 -13.86 10.47 84.03 0.88 -12.98 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 N -0.75 -35.77 5.30 -343.46 -1.82 -37.59 16 10 C 0.12 4.51 5.92 86.38 0.51 5.02 16 11 C 0.11 3.08 2.44 30.59 0.07 3.16 16 12 H 0.09 2.79 5.95 -2.39 -0.01 2.78 16 13 O -0.56 -16.64 13.03 -148.98 -1.94 -18.58 16 14 C 0.04 0.80 4.92 86.30 0.42 1.22 16 15 N -0.53 -11.53 4.82 -895.15 -4.32 -15.85 16 16 C 0.01 0.21 4.94 86.31 0.43 0.64 16 17 C 0.07 1.32 7.01 72.02 0.50 1.83 16 18 O -0.41 -8.70 10.83 -148.98 -1.61 -10.32 16 19 C 0.06 1.02 7.01 72.02 0.50 1.52 16 20 C 0.02 0.27 5.63 86.31 0.49 0.75 16 21 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 22 H 0.37 17.18 5.41 -92.71 -0.50 16.68 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.39 9.24 9.05 -74.05 -0.67 8.58 16 26 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 2.15 5.94 -2.39 -0.01 2.14 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.25 282.47 -3.35 -73.61 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.14 Total: 25.24 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.28 Total: -1.96 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.83 Total: -116.67 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -3.55 Total: -28.90 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.68 kcal Total: -70.25 -3.35 -73.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251032737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.403 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds