Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47265 * 44.27636 * 3 2 1 5 5 C 1.52995 * 109.47321 * 284.26864 * 3 2 1 6 6 N 1.46502 * 109.46829 * 164.26743 * 3 2 1 7 7 C 1.46505 * 119.99544 * 60.00493 * 6 3 2 8 8 C 1.38820 * 120.00228 * 239.99979 * 6 3 2 9 9 C 1.39803 * 119.58295 * 185.00065 * 8 6 3 10 10 C 1.38598 * 119.48881 * 179.97438 * 9 8 6 11 11 C 1.38393 * 118.67941 * 0.25920 * 10 9 8 12 12 C 1.40547 * 119.14706 * 359.47912 * 11 10 9 13 13 C 1.41324 * 119.78258 * 180.25227 * 12 11 10 14 14 H 1.08001 * 119.99729 * 0.27110 * 13 12 11 15 15 C 1.40017 * 120.00293 * 180.27361 * 13 12 11 16 16 N 1.30750 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00323 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47382 * 89.99712 * 17 15 13 19 19 H 1.48501 * 109.47313 * 210.00151 * 17 15 13 20 20 H 1.48508 * 109.47126 * 329.99826 * 17 15 13 21 21 N 1.31950 * 119.58604 * 4.97686 * 8 6 3 22 22 H 4.18740 * 15.04105 * 0.02562 * 4 2 1 23 23 H 1.08998 * 109.46945 * 60.00509 * 5 3 2 24 24 H 1.08997 * 109.47330 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.47475 * 300.00444 * 5 3 2 26 26 H 1.09007 * 109.46930 * 269.99228 * 7 6 3 27 27 H 1.08991 * 109.47395 * 29.99803 * 7 6 3 28 28 H 1.08999 * 109.47018 * 149.99963 * 7 6 3 29 29 H 1.08000 * 120.25538 * 0.02562 * 9 8 6 30 30 H 1.08002 * 120.65587 * 179.97438 * 10 9 8 31 31 H 1.07994 * 120.42073 * 179.74187 * 11 10 9 32 32 H 0.96995 * 120.00538 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.7350 -0.7175 5 6 3.1562 -0.3546 1.3979 6 7 3.1337 1.3304 -0.3745 7 6 2.7792 2.4964 0.4386 8 6 3.9317 1.4856 -1.4998 9 6 4.4785 2.7389 -1.7906 10 6 5.2754 2.8915 -2.9143 11 6 5.5020 1.7910 -3.7222 12 6 4.9286 0.5561 -3.3735 13 6 5.1557 -0.5777 -4.1860 14 1 5.7717 -0.4945 -5.0692 15 6 4.5820 -1.8089 -3.8461 16 7 3.8367 -1.9099 -2.7766 17 14 4.8815 -3.3074 -4.9204 18 1 6.0934 -4.0224 -4.4460 19 1 3.7088 -4.2150 -4.8422 20 1 5.0805 -2.8759 -6.3275 21 7 4.1649 0.4482 -2.2811 22 1 -1.0500 -0.0003 -0.0009 23 1 2.7934 -1.3440 1.6765 24 1 4.2461 -0.3537 1.3980 25 1 2.7925 0.3810 2.1153 26 1 1.8521 2.9314 0.0652 27 1 2.6445 2.1888 1.4755 28 1 3.5773 3.2364 0.3799 29 1 4.2822 3.5815 -1.1442 30 1 5.7071 3.8513 -3.1570 31 1 6.1151 1.8791 -4.6069 32 1 3.4396 -2.7628 -2.5408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326441217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = 102.627406 kcal Electronic energy + Delta-G solvation = -15671.102105 eV Core-core repulsion = 13212.721592 eV Total energy + Delta-G solvation = -2458.380513 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.56986 -36.39382 -33.64010 -32.42736 -30.49759 -30.05724 -28.89770 -25.79738 -25.41040 -22.84736 -21.20671 -20.04761 -17.61226 -17.31525 -16.21802 -14.88440 -14.86538 -14.29783 -14.23777 -13.56859 -13.28674 -12.93282 -12.32549 -12.01705 -12.01302 -11.81639 -11.39396 -11.18818 -10.99082 -10.86772 -10.58418 -10.40188 -9.99271 -9.91494 -9.57821 -9.42846 -8.78052 -7.91797 -7.48570 -6.46068 -6.36297 -4.48305 2.86276 3.11362 3.12341 3.14455 3.22624 3.29298 3.40011 3.97851 4.24080 4.79878 4.88028 5.59463 5.75915 5.78708 5.92133 6.00401 6.09591 6.17655 6.18198 6.39620 6.53528 6.65679 6.70978 6.82950 6.89549 7.13161 7.22068 7.58467 7.81997 7.94359 7.99165 8.13944 8.36828 8.52195 8.79365 9.09016 10.21074 10.37733 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.010504 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.493678 B = 2665.047269 C = 3645.873934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.158 4.158 3 C 0.241 3.759 4 H 0.159 0.841 5 C -0.150 4.150 6 N -0.612 5.612 7 C 0.105 3.895 8 C 0.411 3.589 9 C -0.364 4.364 10 C -0.031 4.031 11 C -0.315 4.315 12 C 0.292 3.708 13 C -0.433 4.433 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.721 5.721 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 N -0.530 5.530 22 H 0.210 0.790 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 1.396 5.492 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.160 4.160 3 C 0.137 3.863 4 H 0.176 0.824 5 C -0.209 4.209 6 N -0.329 5.329 7 C -0.039 4.039 8 C 0.173 3.827 9 C -0.390 4.390 10 C -0.055 4.055 11 C -0.338 4.338 12 C 0.166 3.834 13 C -0.465 4.465 14 H 0.101 0.899 15 C -0.151 4.151 16 N -0.343 5.343 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.186 1.186 21 N -0.251 5.251 22 H 0.226 0.774 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.122 0.458 5.898 6.689 hybrid contribution 0.108 0.286 -0.637 0.707 sum -3.013 0.744 5.261 6.108 Atomic orbital electron populations 1.24704 0.95707 1.01786 1.03647 1.24083 0.95110 0.98925 0.97865 1.18133 0.81973 0.88158 0.98030 0.82439 1.22073 1.01776 1.00877 0.96134 1.45974 1.54564 1.05305 1.27080 1.21408 0.99575 0.88779 0.94113 1.18488 0.87671 0.90223 0.86280 1.20638 1.16071 0.96860 1.05407 1.20599 0.94870 0.96598 0.93461 1.21540 1.13017 0.95006 1.04219 1.18197 0.86208 0.91143 0.87882 1.19576 1.26364 0.92238 1.08304 0.89885 1.26008 0.93735 1.00291 0.95024 1.70031 1.19522 1.24842 1.19888 0.86363 0.78653 0.80811 0.81158 1.19486 1.20237 1.18644 1.68124 1.22464 1.27193 1.07331 0.77352 0.92034 0.91599 0.93227 0.94797 0.92565 0.91468 0.88819 0.88826 0.88650 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.07 19.25 29.55 0.57 -3.50 16 2 C -0.16 -3.07 12.34 -37.12 -0.46 -3.53 16 3 C 0.24 4.91 3.13 -70.72 -0.22 4.69 16 4 H 0.16 3.76 5.84 -51.93 -0.30 3.46 16 5 C -0.15 -2.48 9.13 37.15 0.34 -2.15 16 6 N -0.61 -13.02 2.85 -177.28 -0.51 -13.52 16 7 C 0.11 1.79 9.62 59.85 0.58 2.37 16 8 C 0.41 10.23 7.38 -155.33 -1.15 9.08 16 9 C -0.36 -8.51 9.29 -38.86 -0.36 -8.87 16 10 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 11 C -0.31 -7.97 9.83 -38.65 -0.38 -8.35 16 12 C 0.29 8.10 6.55 -85.00 -0.56 7.55 16 13 C -0.43 -11.61 9.14 -37.74 -0.34 -11.95 16 14 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 15 C 0.07 1.87 5.50 -17.35 -0.10 1.77 16 16 N -0.72 -18.68 10.50 55.55 0.58 -18.09 16 17 Si 0.91 18.60 29.56 -169.99 -5.02 13.58 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 21 N -0.53 -14.54 6.37 -10.33 -0.07 -14.60 16 22 H 0.21 2.65 7.80 -54.09 -0.42 2.22 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.73 6.66 -51.93 -0.35 0.38 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 28 H 0.07 1.09 5.96 -51.93 -0.31 0.78 16 29 H 0.09 1.94 6.01 -52.49 -0.32 1.62 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.27 6.38 8.29 -40.82 -0.34 6.04 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -29.38 277.26 -7.00 -36.38 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.69 Total: 6.08 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.48 Total: -14.00 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.01 Total: -46.22 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.38 -7.00 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326441217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.008 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds