Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47265 * 44.27636 * 3 2 1 5 5 C 1.52995 * 109.47321 * 284.26864 * 3 2 1 6 6 N 1.46502 * 109.46829 * 164.26743 * 3 2 1 7 7 C 1.46505 * 119.99544 * 60.00493 * 6 3 2 8 8 C 1.38820 * 120.00228 * 239.99979 * 6 3 2 9 9 C 1.39803 * 119.58295 * 185.00065 * 8 6 3 10 10 C 1.38598 * 119.48881 * 179.97438 * 9 8 6 11 11 C 1.38393 * 118.67941 * 0.25920 * 10 9 8 12 12 C 1.40547 * 119.14706 * 359.47912 * 11 10 9 13 13 C 1.41324 * 119.78258 * 180.25227 * 12 11 10 14 14 H 1.08001 * 119.99729 * 0.27110 * 13 12 11 15 15 C 1.40017 * 120.00293 * 180.27361 * 13 12 11 16 16 N 1.30750 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00323 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47382 * 89.99712 * 17 15 13 19 19 H 1.48501 * 109.47313 * 210.00151 * 17 15 13 20 20 H 1.48508 * 109.47126 * 329.99826 * 17 15 13 21 21 N 1.31950 * 119.58604 * 4.97686 * 8 6 3 22 22 H 4.18740 * 15.04105 * 0.02562 * 4 2 1 23 23 H 1.08998 * 109.46945 * 60.00509 * 5 3 2 24 24 H 1.08997 * 109.47330 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.47475 * 300.00444 * 5 3 2 26 26 H 1.09007 * 109.46930 * 269.99228 * 7 6 3 27 27 H 1.08991 * 109.47395 * 29.99803 * 7 6 3 28 28 H 1.08999 * 109.47018 * 149.99963 * 7 6 3 29 29 H 1.08000 * 120.25538 * 0.02562 * 9 8 6 30 30 H 1.08002 * 120.65587 * 179.97438 * 10 9 8 31 31 H 1.07994 * 120.42073 * 179.74187 * 11 10 9 32 32 H 0.96995 * 120.00538 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.7350 -0.7175 5 6 3.1562 -0.3546 1.3979 6 7 3.1337 1.3304 -0.3745 7 6 2.7792 2.4964 0.4386 8 6 3.9317 1.4856 -1.4998 9 6 4.4785 2.7389 -1.7906 10 6 5.2754 2.8915 -2.9143 11 6 5.5020 1.7910 -3.7222 12 6 4.9286 0.5561 -3.3735 13 6 5.1557 -0.5777 -4.1860 14 1 5.7717 -0.4945 -5.0692 15 6 4.5820 -1.8089 -3.8461 16 7 3.8367 -1.9099 -2.7766 17 14 4.8815 -3.3074 -4.9204 18 1 6.0934 -4.0224 -4.4460 19 1 3.7088 -4.2150 -4.8422 20 1 5.0805 -2.8759 -6.3275 21 7 4.1649 0.4482 -2.2811 22 1 -1.0500 -0.0003 -0.0009 23 1 2.7934 -1.3440 1.6765 24 1 4.2461 -0.3537 1.3980 25 1 2.7925 0.3810 2.1153 26 1 1.8521 2.9314 0.0652 27 1 2.6445 2.1888 1.4755 28 1 3.5773 3.2364 0.3799 29 1 4.2822 3.5815 -1.1442 30 1 5.7071 3.8513 -3.1570 31 1 6.1151 1.8791 -4.6069 32 1 3.4396 -2.7628 -2.5408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326441217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = 87.253827 kcal Electronic energy + Delta-G solvation = -15671.768753 eV Core-core repulsion = 13212.721592 eV Total energy + Delta-G solvation = -2459.047161 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35335 -38.03630 -35.47465 -33.98463 -32.36068 -31.59908 -30.59109 -27.29584 -27.28695 -24.42465 -23.04913 -21.78098 -19.40767 -18.81627 -17.93311 -16.60286 -16.50881 -16.07721 -15.80485 -15.16100 -14.97731 -14.56089 -13.95320 -13.80246 -13.53811 -13.22081 -12.87186 -12.79505 -12.69501 -12.51337 -12.26583 -12.11172 -11.73641 -11.39931 -11.28428 -10.98383 -10.55504 -9.82295 -9.37362 -8.23719 -8.20913 -6.46452 1.05494 1.33480 1.42268 1.54644 1.58434 1.70131 1.99331 2.25575 2.71407 2.92784 3.52544 4.03953 4.18705 4.35888 4.40279 4.53404 4.63344 4.71656 4.77725 4.88336 4.99531 5.00903 5.03780 5.12847 5.30539 5.34146 5.42459 5.74243 5.97409 6.11215 6.16430 6.58257 6.66949 6.76358 6.89724 7.18568 8.32431 8.50963 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.010504 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.493678 B = 2665.047269 C = 3645.873934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.214 4.214 3 C 0.235 3.765 4 H 0.117 0.883 5 C -0.138 4.138 6 N -0.615 5.615 7 C 0.103 3.897 8 C 0.391 3.609 9 C -0.367 4.367 10 C -0.029 4.029 11 C -0.343 4.343 12 C 0.258 3.742 13 C -0.469 4.469 14 H 0.085 0.915 15 C 0.030 3.970 16 N -0.748 5.748 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.259 1.259 21 N -0.557 5.557 22 H 0.250 0.750 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 1.678 6.318 7.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.215 4.215 3 C 0.131 3.869 4 H 0.135 0.865 5 C -0.196 4.196 6 N -0.331 5.331 7 C -0.040 4.040 8 C 0.152 3.848 9 C -0.393 4.393 10 C -0.053 4.053 11 C -0.366 4.366 12 C 0.131 3.869 13 C -0.501 4.501 14 H 0.103 0.897 15 C -0.192 4.192 16 N -0.370 5.370 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.183 1.183 21 N -0.279 5.279 22 H 0.267 0.733 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.136 0.766 6.761 7.963 hybrid contribution 0.323 0.292 -0.807 0.917 sum -3.812 1.058 5.954 7.149 Atomic orbital electron populations 1.25637 0.96522 0.99018 1.01022 1.24140 0.95521 1.01488 1.00356 1.18025 0.83127 0.86961 0.98790 0.86504 1.21959 1.00893 1.02264 0.94490 1.46230 1.53697 1.06885 1.26280 1.21608 0.99858 0.87667 0.94855 1.18982 0.88268 0.90477 0.87089 1.21018 1.15297 0.97247 1.05708 1.21007 0.94086 0.97482 0.92721 1.21706 1.14181 0.95284 1.05430 1.18693 0.87090 0.92478 0.88660 1.19906 1.27770 0.93440 1.08965 0.89655 1.26879 0.93113 1.02882 0.96342 1.70154 1.19907 1.25818 1.21140 0.85198 0.78756 0.76583 0.79064 1.18753 1.19425 1.18252 1.68127 1.23200 1.28685 1.07877 0.73343 0.90731 0.92760 0.91020 0.94474 0.89981 0.90625 0.85934 0.85183 0.87950 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.38 19.25 74.32 1.43 -4.95 16 2 C -0.21 -8.07 12.34 31.13 0.38 -7.69 16 3 C 0.23 9.62 3.13 43.18 0.14 9.76 16 4 H 0.12 5.81 5.84 -2.38 -0.01 5.80 16 5 C -0.14 -4.45 9.13 71.98 0.66 -3.79 16 6 N -0.61 -25.90 2.85 -714.79 -2.04 -27.94 16 7 C 0.10 3.28 9.62 127.77 1.23 4.51 16 8 C 0.39 19.64 7.38 133.42 0.98 20.62 16 9 C -0.37 -16.84 9.29 22.73 0.21 -16.63 16 10 C -0.03 -1.32 10.15 22.39 0.23 -1.09 16 11 C -0.34 -17.73 9.83 22.87 0.22 -17.50 16 12 C 0.26 14.82 6.55 40.18 0.26 15.08 16 13 C -0.47 -26.12 9.14 23.46 0.21 -25.91 16 14 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 15 C 0.03 1.54 5.50 85.29 0.47 2.00 16 16 N -0.75 -40.11 10.50 21.84 0.23 -39.89 16 17 Si 0.98 38.81 29.56 68.60 2.03 40.84 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 N -0.56 -31.59 6.37 -186.59 -1.19 -32.78 16 22 H 0.25 5.24 7.80 -4.42 -0.03 5.20 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.95 6.66 -2.39 -0.02 1.94 16 26 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.08 2.17 6.43 -2.39 -0.02 2.16 16 28 H 0.08 2.26 5.96 -2.39 -0.01 2.24 16 29 H 0.12 4.78 6.01 -2.91 -0.02 4.77 16 30 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 31 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 32 H 0.28 13.42 8.29 -92.71 -0.77 12.65 16 Total: -1.00 -65.84 277.26 6.57 -59.27 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 1.11 Total: 26.09 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 6.43 Total: -25.59 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.00 Total: -100.60 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -65.84 6.57 -59.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326441217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.520 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds