Wall clock time and date at job start Sun Mar 29 2020 21:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48506 * 109.47024 * 269.99895 * 3 2 1 5 5 H 1.48489 * 109.47207 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00310 * 3 2 1 7 7 C 1.40034 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.41313 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.40595 * 119.78089 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.14426 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68021 * 0.27837 * 11 10 9 13 13 C 1.39760 * 119.49120 * 359.45190 * 12 11 10 14 14 N 1.38823 * 119.58258 * 180.28342 * 13 12 11 15 15 C 1.46504 * 120.00213 * 0.27422 * 14 13 12 16 16 H 1.09004 * 110.34499 * 325.70034 * 15 14 13 17 17 C 1.51104 * 110.38762 * 87.98956 * 15 14 13 18 18 C 1.30727 * 110.98951 * 135.16034 * 17 15 14 19 19 C 1.51104 * 111.13466 * 0.15875 * 18 17 15 20 20 C 1.54632 * 104.72909 * 343.46475 * 19 18 17 21 21 N 1.31977 * 120.83137 * 0.55630 * 13 12 11 22 22 H 0.97005 * 119.99873 * 0.02562 * 1 2 3 23 23 H 1.07996 * 120.42621 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.65533 * 179.97438 * 11 10 9 25 25 H 1.08002 * 120.25227 * 179.70432 * 12 11 10 26 26 H 0.97001 * 120.00366 * 180.27848 * 14 13 12 27 27 H 1.08002 * 124.44733 * 315.22261 * 17 15 14 28 28 H 1.07998 * 124.41428 * 180.02562 * 18 17 15 29 29 H 1.08996 * 110.38157 * 224.64806 * 19 18 17 30 30 H 1.08998 * 110.38359 * 102.27669 * 19 18 17 31 31 H 1.09005 * 111.03081 * 266.60084 * 20 19 18 32 32 H 1.08992 * 111.03542 * 142.66882 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4365 -0.0005 10 6 2.0084 -3.6515 -0.0005 11 6 1.3033 -4.8418 -0.0011 12 6 -0.0822 -4.7944 -0.0075 13 6 -0.7283 -3.5551 -0.0016 14 7 -2.1156 -3.5055 -0.0021 15 6 -2.8931 -4.7472 -0.0026 16 1 -2.3784 -5.5164 -0.5786 17 6 -3.1308 -5.2201 1.4127 18 6 -4.3728 -5.5921 1.5797 19 6 -5.1658 -5.4323 0.3034 20 6 -4.3061 -4.4978 -0.5791 21 7 -0.0361 -2.4315 -0.0010 22 1 -0.4850 0.8401 -0.0004 23 1 3.0884 -3.6554 -0.0010 24 1 1.8220 -5.7891 -0.0015 25 1 -0.6579 -5.7082 -0.0129 26 1 -2.5703 -2.6487 -0.0021 27 1 -2.3746 -5.2459 2.1833 28 1 -4.7782 -5.9668 2.5080 29 1 -6.1326 -4.9742 0.5120 30 1 -5.2994 -6.3980 -0.1840 31 1 -4.6028 -3.4568 -0.4512 32 1 -4.3587 -4.7920 -1.6273 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327691014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:16 Heat of formation + Delta-G solvation = 40.123132 kcal Electronic energy + Delta-G solvation = -15296.960602 eV Core-core repulsion = 12835.869701 eV Total energy + Delta-G solvation = -2461.090901 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46740 -39.27253 -35.87134 -34.68045 -32.27108 -30.83615 -29.82506 -27.47420 -27.15529 -23.47357 -22.59450 -21.54295 -19.73226 -19.15972 -18.12148 -17.13129 -16.71534 -16.37470 -16.06927 -15.46078 -14.66105 -14.50496 -14.27948 -13.71063 -13.32510 -12.87705 -12.82888 -12.72854 -12.63670 -12.52256 -12.24012 -12.18579 -12.01948 -11.73242 -11.29378 -10.66585 -9.88978 -9.84820 -9.44651 -8.29032 -8.22831 -6.48317 1.05889 1.28692 1.37262 1.41255 1.54727 1.58959 2.25172 2.76309 2.92366 3.67955 3.79571 4.07891 4.14363 4.39543 4.45177 4.49881 4.63757 4.86759 4.90435 4.95366 5.00001 5.00333 5.11331 5.18384 5.30348 5.38652 5.60078 5.71846 5.91828 5.97568 6.09021 6.22633 6.57735 6.83923 6.95727 7.23098 8.34702 8.51505 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035102 B = 0.006739 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.475565 B = 4153.880590 C = 4746.541114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.258 3.742 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.368 4.368 13 C 0.395 3.605 14 N -0.724 5.724 15 C 0.175 3.825 16 H 0.079 0.921 17 C -0.198 4.198 18 C -0.149 4.149 19 C -0.091 4.091 20 C -0.126 4.126 21 N -0.567 5.567 22 H 0.276 0.724 23 H 0.102 0.898 24 H 0.128 0.872 25 H 0.115 0.885 26 H 0.391 0.609 27 H 0.100 0.900 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 -6.297 0.307 10.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.130 3.870 10 C -0.368 4.368 11 C -0.055 4.055 12 C -0.393 4.393 13 C 0.155 3.845 14 N -0.358 5.358 15 C 0.070 3.930 16 H 0.096 0.904 17 C -0.218 4.218 18 C -0.168 4.168 19 C -0.128 4.128 20 C -0.164 4.164 21 N -0.289 5.289 22 H 0.086 0.914 23 H 0.121 0.879 24 H 0.146 0.854 25 H 0.133 0.867 26 H 0.226 0.774 27 H 0.119 0.881 28 H 0.160 0.840 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.621 -5.586 0.285 11.129 hybrid contribution 0.999 0.168 0.180 1.029 sum -8.622 -5.418 0.464 10.194 Atomic orbital electron populations 1.70257 1.08817 1.28668 1.29707 1.26987 0.95762 1.04421 0.92509 0.85139 0.78970 0.75732 0.79378 1.18756 1.19288 1.18023 1.19942 0.94605 0.90499 1.45333 0.89542 1.18709 0.87726 0.93244 0.87278 1.21693 0.98985 0.93772 1.22383 1.21007 0.93705 0.97177 0.93574 1.20950 0.94920 0.96075 1.27404 1.19018 0.86132 0.90235 0.89140 1.44475 1.01303 1.07814 1.82213 1.20876 0.92223 0.86000 0.93911 0.90358 1.23752 0.98155 1.01777 0.98117 1.23560 0.94578 0.99124 0.99541 1.21357 0.98630 1.00173 0.92640 1.22777 0.92102 1.00938 1.00547 1.68204 1.07993 1.26108 1.26638 0.91359 0.87933 0.85368 0.86668 0.77437 0.88143 0.83978 0.89131 0.88580 0.90832 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.76 11.46 21.84 0.25 -41.51 16 2 C 0.02 1.31 5.50 85.29 0.47 1.78 16 3 Si 0.99 39.44 29.56 68.60 2.03 41.47 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.47 -26.93 9.14 23.46 0.21 -26.71 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.26 15.20 6.55 40.19 0.26 15.47 16 10 C -0.35 -18.29 9.83 22.87 0.22 -18.06 16 11 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 12 C -0.37 -17.33 9.26 22.73 0.21 -17.12 16 13 C 0.40 20.17 7.65 133.40 1.02 21.19 16 14 N -0.72 -30.32 5.30 -324.75 -1.72 -32.05 16 15 C 0.18 5.61 2.87 44.93 0.13 5.74 16 16 H 0.08 2.59 6.44 -2.39 -0.02 2.57 16 17 C -0.20 -5.95 10.42 26.05 0.27 -5.68 16 18 C -0.15 -3.37 10.78 26.05 0.28 -3.09 16 19 C -0.09 -1.68 6.81 30.53 0.21 -1.47 16 20 C -0.13 -2.99 6.88 31.71 0.22 -2.77 16 21 N -0.57 -33.12 7.89 -186.59 -1.47 -34.59 16 22 H 0.28 13.81 8.29 -92.70 -0.77 13.04 16 23 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 24 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 25 H 0.12 4.76 6.20 -2.91 -0.02 4.75 16 26 H 0.39 16.64 8.52 -92.71 -0.79 15.85 16 27 H 0.10 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.80 7.81 -2.38 -0.02 1.79 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.69 273.11 3.16 -63.53 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.33 Total: 35.09 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.74 Total: -31.94 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -2.94 Total: -108.15 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -66.69 3.16 -63.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327691014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.653 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds