Wall clock time and date at job start Sun Mar 29 2020 21:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00301 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99902 * 180.02562 * 12 11 10 15 15 C 1.47020 * 125.64987 * 359.68989 * 14 12 11 16 16 C 1.54336 * 107.26729 * 178.85486 * 15 14 12 17 17 C 1.55151 * 103.01956 * 338.13859 * 16 15 14 18 18 H 1.09007 * 111.00549 * 277.23557 * 17 16 15 19 19 F 1.39903 * 111.00661 * 153.38545 * 17 16 15 20 20 C 1.47424 * 125.64899 * 180.02562 * 14 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 25 25 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 26 26 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 27 27 H 1.09005 * 109.88312 * 298.39611 * 15 14 12 28 28 H 1.09004 * 109.88289 * 59.56126 * 15 14 12 29 29 H 1.09002 * 110.84828 * 219.67159 * 16 15 14 30 30 H 1.08995 * 110.51937 * 96.45549 * 16 15 14 31 31 H 1.08995 * 110.36848 * 322.93006 * 20 14 12 32 32 H 1.09001 * 110.36940 * 85.13809 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4865 -2.6366 -0.0014 12 6 6.1604 -3.8038 -0.0020 13 8 5.5524 -4.8569 -0.0021 14 7 7.5081 -3.8038 -0.0016 15 6 8.3650 -2.6092 -0.0068 16 6 9.8294 -3.0956 0.0254 17 6 9.7092 -4.5278 0.6098 18 1 9.6548 -4.5024 1.6982 19 9 10.7686 -5.3348 0.1814 20 6 8.3673 -5.0018 -0.0027 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 3.6579 -3.1514 0.8880 25 1 3.6585 -3.1495 -0.8920 26 1 5.9715 -1.7966 -0.0002 27 1 8.1853 -2.0280 -0.9114 28 1 8.1588 -2.0012 0.8740 29 1 10.4340 -2.4633 0.6756 30 1 10.2449 -3.1237 -0.9818 31 1 7.9257 -5.7860 0.6121 32 1 8.5184 -5.3594 -1.0212 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469770045.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:08 Heat of formation + Delta-G solvation = -83.632794 kcal Electronic energy + Delta-G solvation = -15796.288140 eV Core-core repulsion = 12899.061554 eV Total energy + Delta-G solvation = -2897.226586 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.97829 -40.05640 -37.37940 -34.98510 -32.85574 -31.46354 -30.00930 -28.88478 -25.08470 -23.38191 -21.71577 -20.81221 -19.89668 -18.12908 -17.40295 -16.88666 -15.80869 -15.50243 -15.23094 -14.97294 -14.34431 -14.22143 -13.76469 -13.65799 -13.28772 -12.93441 -12.61480 -12.57143 -12.00369 -11.49069 -11.22553 -11.14328 -11.06493 -10.41281 -10.30799 -10.00253 -9.83096 -9.34211 -8.90279 -8.63532 -8.39806 -6.11985 -4.12135 2.60076 3.23833 3.31348 3.32660 3.37869 3.80722 4.07071 4.20861 4.30787 4.36488 4.45154 4.80927 5.09329 5.20836 5.24142 5.32201 5.46087 5.54039 5.72571 5.94212 6.16712 6.21962 6.55601 6.75849 7.00376 7.21471 7.23421 7.65812 8.15120 8.43764 8.79751 8.92802 9.47958 11.01092 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.004848 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.301150 B = 5774.060966 C = 6240.303668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.147 3.853 11 N -0.737 5.737 12 C 0.719 3.281 13 O -0.588 6.588 14 N -0.642 5.642 15 C 0.100 3.900 16 C -0.153 4.153 17 C 0.076 3.924 18 H 0.104 0.896 19 F -0.201 7.201 20 C 0.105 3.895 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.392 0.608 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.512 -3.447 0.862 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.213 1.213 7 C -0.561 4.561 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.391 5.391 12 C 0.421 3.579 13 O -0.465 6.465 14 N -0.383 5.383 15 C -0.024 4.024 16 C -0.191 4.191 17 C 0.039 3.961 18 H 0.122 0.878 19 F -0.181 7.181 20 C -0.020 4.020 21 H 0.075 0.925 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.225 0.775 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.760 -4.121 0.845 21.182 hybrid contribution 0.667 1.384 -0.038 1.537 sum 21.426 -2.736 0.807 21.615 Atomic orbital electron populations 1.69905 1.06288 1.27053 1.50394 1.24998 0.94759 0.99124 0.94374 0.86748 0.80242 0.83566 0.78478 1.20227 1.19137 1.21256 1.20913 0.88581 0.94948 1.51666 0.90548 1.19795 0.97982 0.91322 0.96789 1.21429 0.74455 1.00002 1.01657 1.45530 1.08939 1.06063 1.78569 1.15501 0.79325 0.84995 0.78063 1.90926 1.66513 1.30727 1.58366 1.47399 1.03796 1.07039 1.80103 1.21967 0.89078 0.88805 1.02527 1.23209 0.96602 0.95827 1.03495 1.22696 0.83984 0.89361 1.00046 0.87824 1.92828 1.58284 1.75134 1.91875 1.22455 0.88569 0.88851 1.02098 0.92535 0.96034 0.96464 0.92008 0.91997 0.77501 0.90814 0.90933 0.88778 0.89152 0.89193 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.04 5.61 -4.04 -0.02 3.02 16 11 N -0.74 -12.51 5.52 -65.22 -0.36 -12.87 16 12 C 0.72 12.49 8.49 -86.92 -0.74 11.75 16 13 O -0.59 -12.64 16.60 5.28 0.09 -12.55 16 14 N -0.64 -8.20 3.33 -176.22 -0.59 -8.79 16 15 C 0.10 0.86 6.15 -3.06 -0.02 0.85 16 16 C -0.15 -1.02 6.76 -24.89 -0.17 -1.19 16 17 C 0.08 0.62 4.86 -24.57 -0.12 0.50 16 18 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 19 F -0.20 -1.94 17.24 2.25 0.04 -1.90 16 20 C 0.10 1.14 6.72 -2.52 -0.02 1.13 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 23 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.39 5.54 7.46 -40.82 -0.30 5.23 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.05 8.04 -51.93 -0.42 0.64 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 274.44 15.07 4.14 4.14 Total: -1.00 -33.09 274.44 -6.67 -39.76 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.46 Total: 0.11 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.63 Total: 2.40 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.17 Total: -48.14 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.09 -6.67 -39.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469770045.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.875 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds