Wall clock time and date at job start Sun Mar 29 2020 21:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00301 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99902 * 180.02562 * 12 11 10 15 15 C 1.47020 * 125.64987 * 359.68989 * 14 12 11 16 16 C 1.54336 * 107.26729 * 178.85486 * 15 14 12 17 17 C 1.55151 * 103.01956 * 338.13859 * 16 15 14 18 18 H 1.09007 * 111.00549 * 277.23557 * 17 16 15 19 19 F 1.39903 * 111.00661 * 153.38545 * 17 16 15 20 20 C 1.47424 * 125.64899 * 180.02562 * 14 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 25 25 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 26 26 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 27 27 H 1.09005 * 109.88312 * 298.39611 * 15 14 12 28 28 H 1.09004 * 109.88289 * 59.56126 * 15 14 12 29 29 H 1.09002 * 110.84828 * 219.67159 * 16 15 14 30 30 H 1.08995 * 110.51937 * 96.45549 * 16 15 14 31 31 H 1.08995 * 110.36848 * 322.93006 * 20 14 12 32 32 H 1.09001 * 110.36940 * 85.13809 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4865 -2.6366 -0.0014 12 6 6.1604 -3.8038 -0.0020 13 8 5.5524 -4.8569 -0.0021 14 7 7.5081 -3.8038 -0.0016 15 6 8.3650 -2.6092 -0.0068 16 6 9.8294 -3.0956 0.0254 17 6 9.7092 -4.5278 0.6098 18 1 9.6548 -4.5024 1.6982 19 9 10.7686 -5.3348 0.1814 20 6 8.3673 -5.0018 -0.0027 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 3.6579 -3.1514 0.8880 25 1 3.6585 -3.1495 -0.8920 26 1 5.9715 -1.7966 -0.0002 27 1 8.1853 -2.0280 -0.9114 28 1 8.1588 -2.0012 0.8740 29 1 10.4340 -2.4633 0.6756 30 1 10.2449 -3.1237 -0.9818 31 1 7.9257 -5.7860 0.6121 32 1 8.5184 -5.3594 -1.0212 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469770045.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:07 Heat of formation + Delta-G solvation = -107.453174 kcal Electronic energy + Delta-G solvation = -15797.321069 eV Core-core repulsion = 12899.061554 eV Total energy + Delta-G solvation = -2898.259515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.68419 -41.27520 -38.43867 -36.63897 -34.81679 -32.73525 -31.42285 -29.80897 -26.81184 -24.49336 -22.73607 -22.28990 -21.14544 -19.29338 -18.95021 -18.15817 -17.03604 -16.73345 -16.33096 -16.13033 -15.70252 -15.54169 -15.17790 -14.70205 -14.60805 -14.29044 -13.97489 -13.39370 -13.31207 -13.02657 -12.66843 -12.19770 -12.16469 -11.79060 -11.74921 -11.68652 -11.54816 -11.34762 -10.77898 -10.26518 -9.60174 -8.28984 -6.36643 1.40233 1.43296 1.45075 1.54541 2.03585 2.38206 2.93878 3.06123 3.25715 3.41672 3.56527 3.87902 4.18234 4.31760 4.39636 4.43548 4.53216 4.67316 4.74687 4.82272 4.88430 5.06746 5.11301 5.25600 5.40663 5.42602 5.65224 5.93344 6.23579 6.70479 6.91864 7.27868 7.47392 8.87928 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.004848 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.301150 B = 5774.060966 C = 6240.303668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.236 1.236 6 H -0.287 1.287 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.010 4.010 10 C 0.163 3.837 11 N -0.726 5.726 12 C 0.715 3.285 13 O -0.639 6.639 14 N -0.637 5.637 15 C 0.090 3.910 16 C -0.140 4.140 17 C 0.084 3.916 18 H 0.122 0.878 19 F -0.208 7.208 20 C 0.096 3.904 21 H 0.268 0.732 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.410 0.590 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.916 -1.229 1.102 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.158 1.158 6 H -0.213 1.213 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.048 4.048 10 C 0.039 3.961 11 N -0.381 5.381 12 C 0.417 3.583 13 O -0.521 6.521 14 N -0.376 5.376 15 C -0.031 4.031 16 C -0.178 4.178 17 C 0.047 3.953 18 H 0.140 0.860 19 F -0.189 7.189 20 C -0.028 4.028 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.246 0.754 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 24.253 -1.892 1.084 24.351 hybrid contribution -0.416 0.576 -0.123 0.721 sum 23.837 -1.316 0.960 23.892 Atomic orbital electron populations 1.70082 1.08653 1.28460 1.51937 1.26096 0.95683 1.03922 0.93596 0.85519 0.79672 0.77172 0.79376 1.18877 1.15844 1.21338 1.21247 0.91557 0.93411 1.51672 0.95364 1.19634 0.94364 0.92632 0.98152 1.20929 0.76811 0.98500 0.99871 1.45099 1.07310 1.07031 1.78699 1.15625 0.80758 0.84091 0.77866 1.90890 1.68226 1.32429 1.60517 1.47339 1.02540 1.09433 1.78279 1.22333 0.89446 0.87415 1.03928 1.23219 0.95430 0.94721 1.04456 1.22715 0.81856 0.89894 1.00841 0.86040 1.92819 1.58408 1.75610 1.92064 1.22612 0.89915 0.88197 1.02109 0.92316 0.94425 0.94445 0.93910 0.94060 0.75380 0.89735 0.89187 0.85798 0.88653 0.90722 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.00 0.23 5.47 84.66 0.46 0.70 16 3 Si 0.96 41.65 27.47 68.60 1.88 43.54 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 6 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.81 9.66 25.60 0.25 -30.56 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.44 4.16 29.85 0.12 -0.32 16 10 C 0.16 6.78 5.61 86.38 0.48 7.26 16 11 N -0.73 -23.54 5.52 -478.52 -2.64 -26.18 16 12 C 0.71 24.37 8.49 179.06 1.52 25.89 16 13 O -0.64 -28.17 16.60 -4.01 -0.07 -28.23 16 14 N -0.64 -15.10 3.33 -829.69 -2.76 -17.86 16 15 C 0.09 1.22 6.15 86.73 0.53 1.76 16 16 C -0.14 -1.27 6.76 31.78 0.21 -1.06 16 17 C 0.08 1.13 4.86 31.99 0.16 1.28 16 18 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 19 F -0.21 -3.54 17.24 44.97 0.78 -2.76 16 20 C 0.10 1.98 6.72 86.86 0.58 2.57 16 21 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 22 H 0.04 1.55 7.20 -2.38 -0.02 1.54 16 23 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 24 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.41 10.23 7.46 -92.71 -0.69 9.54 16 27 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -74.79 274.44 2.19 -72.60 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.37 Total: 10.29 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.33 Total: 7.51 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -5.10 Total: -102.94 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.07 Total: -28.23 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.54 kcal Total: -74.79 2.19 -72.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469770045.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.853 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds