Wall clock time and date at job start Sun Mar 29 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47666 * 239.99495 * 2 1 3 5 5 C 1.50694 * 109.47460 * 175.00013 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 N 1.46900 * 109.47238 * 119.99523 * 2 1 3 14 14 C 1.46847 * 110.99789 * 59.20818 * 13 2 1 15 15 C 1.53038 * 109.52467 * 174.16116 * 14 13 2 16 16 C 1.53118 * 109.27799 * 59.18179 * 15 14 13 17 17 H 1.09008 * 109.52110 * 62.25249 * 16 15 14 18 18 F 1.39898 * 109.52599 * 182.44143 * 16 15 14 19 19 C 1.53119 * 109.16257 * 302.35028 * 16 15 14 20 20 H 1.09008 * 109.49927 * 297.70821 * 19 16 15 21 21 N 1.46896 * 109.53939 * 177.61208 * 19 16 15 22 22 C 1.46853 * 111.00015 * 295.00445 * 13 2 1 23 23 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47274 * 300.00605 * 1 2 3 25 25 H 1.09002 * 109.46740 * 60.00621 * 1 2 3 26 26 H 1.09005 * 109.46800 * 55.00484 * 4 2 1 27 27 H 1.08998 * 109.47382 * 295.00283 * 4 2 1 28 28 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46857 * 294.18045 * 14 13 2 30 30 H 1.09001 * 109.46078 * 54.15015 * 14 13 2 31 31 H 1.08999 * 109.50427 * 299.24384 * 15 14 13 32 32 H 1.09001 * 109.53736 * 179.14324 * 15 14 13 33 33 H 1.00908 * 110.99878 * 60.17158 * 21 19 16 34 34 H 1.00900 * 111.00274 * 184.12869 * 21 19 16 35 35 H 1.08998 * 109.45840 * 305.85524 * 22 13 2 36 36 H 1.09004 * 109.46104 * 65.81856 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0603 -2.4371 10 1 6.5872 -1.7605 -3.6494 11 1 6.4845 0.3706 -2.4964 12 1 6.6846 -1.6863 -1.2278 13 7 2.0197 -0.6924 1.1995 14 6 1.5334 -2.0773 1.2430 15 6 2.1776 -2.8088 2.4229 16 6 1.8221 -2.0823 3.7230 17 1 0.7421 -2.1046 3.8692 18 9 2.4539 -2.7141 4.7995 19 6 2.2963 -0.6292 3.6326 20 1 3.3809 -0.6063 3.5255 21 7 1.9088 0.0909 4.8529 22 6 1.6487 0.0391 2.4177 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6055 -0.2618 -2.1369 27 1 1.7518 -1.7716 -1.2055 28 1 4.0609 -2.2433 -4.0355 29 1 0.4501 -2.0784 1.3628 30 1 1.7964 -2.5839 0.3144 31 1 3.2602 -2.8202 2.2967 32 1 1.8052 -3.8323 2.4644 33 1 2.3243 -0.3318 5.6696 34 1 2.1512 1.0682 4.7885 35 1 1.9954 1.0697 2.3421 36 1 0.5648 0.0282 2.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575941221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:03 Heat of formation + Delta-G solvation = -57.685318 kcal Electronic energy + Delta-G solvation = -17122.981903 eV Core-core repulsion = 14362.713578 eV Total energy + Delta-G solvation = -2760.268324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.49237 -38.96574 -35.31107 -32.98666 -32.18216 -29.77888 -27.78347 -27.28161 -23.96593 -22.70614 -22.55770 -19.99893 -18.78240 -16.28040 -16.19541 -16.02585 -15.59732 -15.05003 -14.72281 -14.41505 -14.05122 -13.79923 -13.35572 -12.95457 -12.34236 -12.23064 -12.01948 -11.77298 -11.49014 -11.23162 -11.08266 -10.89710 -10.66773 -10.46959 -10.27308 -10.17941 -9.83606 -9.20114 -9.02452 -8.77101 -8.28229 -7.56209 -5.91847 -3.90043 3.38830 3.42922 3.46318 4.13987 4.53327 4.57251 4.73031 4.79877 5.07086 5.10922 5.43401 5.45061 5.53436 5.72099 5.78453 5.82548 5.90657 5.93419 6.06957 6.08543 6.19112 6.39055 6.48154 6.57741 6.69128 6.91673 7.01537 7.33623 7.48210 7.63430 7.84959 7.95561 8.09143 8.53961 9.15733 9.71994 11.19963 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.007804 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.045008 B = 3586.946957 C = 3966.501019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.071 0.929 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.890 3.110 10 H -0.290 1.290 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.512 5.512 14 C 0.056 3.944 15 C -0.141 4.141 16 C 0.098 3.902 17 H 0.082 0.918 18 F -0.220 7.220 19 C 0.070 3.930 20 H 0.056 0.944 21 N -0.847 5.847 22 C 0.062 3.938 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.258 0.742 29 H 0.028 0.972 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.344 0.656 34 H 0.344 0.656 35 H 0.073 0.927 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 1.618 12.327 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.216 1.216 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.236 5.236 14 C -0.072 4.072 15 C -0.179 4.179 16 C 0.062 3.938 17 H 0.100 0.900 18 F -0.201 7.201 19 C -0.042 4.042 20 H 0.074 0.926 21 N -0.378 5.378 22 C -0.067 4.067 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.941 1.282 11.969 13.012 hybrid contribution 1.231 0.216 0.111 1.255 sum -3.710 1.498 12.080 12.725 Atomic orbital electron populations 1.22534 0.99643 1.01394 1.00873 1.21910 0.90136 0.98439 0.91417 0.91087 1.19244 0.96408 0.95383 0.89852 1.21128 0.91757 1.33213 1.07069 0.92208 1.25001 0.98015 0.95832 0.95955 1.69951 1.35350 1.36797 1.12300 0.86696 0.86348 0.78013 0.77117 1.21626 1.20507 1.20388 1.62005 1.59477 1.01263 1.00875 1.22071 0.95795 0.90181 0.99141 1.22191 1.03703 0.98987 0.93045 1.21751 0.97003 0.91165 0.83925 0.89953 1.92759 1.84801 1.84050 1.58442 1.21871 0.98916 0.92751 0.90659 0.92597 1.58652 1.67872 1.06962 1.04309 1.21960 0.97788 0.97726 0.89227 0.92882 0.93955 0.92413 0.96202 0.96102 0.93213 0.95387 0.88095 0.89734 0.90668 0.84292 0.84343 0.90903 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.50 37.16 0.32 -2.77 16 2 C 0.09 1.74 2.30 -67.72 -0.16 1.59 16 3 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 4 C 0.03 0.69 4.27 -27.89 -0.12 0.57 16 5 C -0.49 -13.52 8.84 -34.44 -0.30 -13.82 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.51 -9.32 4.36 -226.69 -0.99 -10.31 16 14 C 0.06 0.96 4.64 -3.83 -0.02 0.94 16 15 C -0.14 -2.15 5.83 -26.65 -0.16 -2.30 16 16 C 0.10 1.40 3.57 -26.61 -0.10 1.31 16 17 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 18 F -0.22 -3.31 16.73 2.25 0.04 -3.28 16 19 C 0.07 0.98 3.18 -67.64 -0.22 0.77 16 20 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 21 N -0.85 -9.86 9.25 -4.60 -0.04 -9.91 16 22 C 0.06 0.94 4.57 -3.83 -0.02 0.92 16 23 H 0.05 0.88 6.52 -51.93 -0.34 0.54 16 24 H 0.04 0.63 6.65 -51.93 -0.35 0.28 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.54 6.05 -51.93 -0.31 0.22 16 28 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.45 6.62 -51.93 -0.34 0.10 16 30 H 0.10 2.01 5.93 -51.93 -0.31 1.70 16 31 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.34 3.71 8.70 -39.29 -0.34 3.37 16 34 H 0.34 3.44 8.99 -39.29 -0.35 3.09 16 35 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.04 0.58 6.73 -51.93 -0.35 0.23 16 LS Contribution 282.90 15.07 4.26 4.26 Total: -1.00 -29.07 282.90 -7.49 -36.56 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.61 Total: 3.35 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.86 Total: -11.43 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.29 Total: -46.29 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.07 -7.49 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.128 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds