Wall clock time and date at job start Sun Mar 29 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47666 * 239.99495 * 2 1 3 5 5 C 1.50694 * 109.47460 * 175.00013 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 N 1.46900 * 109.47238 * 119.99523 * 2 1 3 14 14 C 1.46847 * 110.99789 * 59.20818 * 13 2 1 15 15 C 1.53038 * 109.52467 * 174.16116 * 14 13 2 16 16 C 1.53118 * 109.27799 * 59.18179 * 15 14 13 17 17 H 1.09008 * 109.52110 * 62.25249 * 16 15 14 18 18 F 1.39898 * 109.52599 * 182.44143 * 16 15 14 19 19 C 1.53119 * 109.16257 * 302.35028 * 16 15 14 20 20 H 1.09008 * 109.49927 * 297.70821 * 19 16 15 21 21 N 1.46896 * 109.53939 * 177.61208 * 19 16 15 22 22 C 1.46853 * 111.00015 * 295.00445 * 13 2 1 23 23 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47274 * 300.00605 * 1 2 3 25 25 H 1.09002 * 109.46740 * 60.00621 * 1 2 3 26 26 H 1.09005 * 109.46800 * 55.00484 * 4 2 1 27 27 H 1.08998 * 109.47382 * 295.00283 * 4 2 1 28 28 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46857 * 294.18045 * 14 13 2 30 30 H 1.09001 * 109.46078 * 54.15015 * 14 13 2 31 31 H 1.08999 * 109.50427 * 299.24384 * 15 14 13 32 32 H 1.09001 * 109.53736 * 179.14324 * 15 14 13 33 33 H 1.00908 * 110.99878 * 60.17158 * 21 19 16 34 34 H 1.00900 * 111.00274 * 184.12869 * 21 19 16 35 35 H 1.08998 * 109.45840 * 305.85524 * 22 13 2 36 36 H 1.09004 * 109.46104 * 65.81856 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0603 -2.4371 10 1 6.5872 -1.7605 -3.6494 11 1 6.4845 0.3706 -2.4964 12 1 6.6846 -1.6863 -1.2278 13 7 2.0197 -0.6924 1.1995 14 6 1.5334 -2.0773 1.2430 15 6 2.1776 -2.8088 2.4229 16 6 1.8221 -2.0823 3.7230 17 1 0.7421 -2.1046 3.8692 18 9 2.4539 -2.7141 4.7995 19 6 2.2963 -0.6292 3.6326 20 1 3.3809 -0.6063 3.5255 21 7 1.9088 0.0909 4.8529 22 6 1.6487 0.0391 2.4177 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6055 -0.2618 -2.1369 27 1 1.7518 -1.7716 -1.2055 28 1 4.0609 -2.2433 -4.0355 29 1 0.4501 -2.0784 1.3628 30 1 1.7964 -2.5839 0.3144 31 1 3.2602 -2.8202 2.2967 32 1 1.8052 -3.8323 2.4644 33 1 2.3243 -0.3318 5.6696 34 1 2.1512 1.0682 4.7885 35 1 1.9954 1.0697 2.3421 36 1 0.5648 0.0282 2.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575941221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:03 Heat of formation + Delta-G solvation = -78.277320 kcal Electronic energy + Delta-G solvation = -17123.874839 eV Core-core repulsion = 14362.713578 eV Total energy + Delta-G solvation = -2761.161261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.66198 -40.33101 -36.67281 -34.74699 -33.70295 -31.28854 -29.11366 -28.92718 -25.53007 -24.44157 -23.82059 -21.29942 -20.25762 -18.34100 -17.51002 -17.16187 -16.83933 -16.46616 -16.32516 -15.90842 -15.27799 -15.07371 -14.80571 -14.35628 -14.04846 -13.65105 -13.48772 -13.26703 -13.07711 -12.75815 -12.58130 -12.47697 -12.37722 -12.21874 -11.84187 -11.49917 -11.27651 -11.08534 -10.97979 -10.45619 -9.75355 -8.95714 -8.09694 -6.14065 1.41847 1.43743 1.51159 2.47223 2.90961 3.25115 3.38796 3.56032 3.61603 3.90585 3.95270 4.18759 4.27394 4.30734 4.44200 4.50332 4.60359 4.68425 4.79344 4.85254 4.95990 4.99488 5.14307 5.20064 5.22619 5.32310 5.51757 5.71221 5.90822 6.04140 6.30232 6.40426 6.47385 6.55855 6.99785 7.51732 9.01948 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.007804 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.045008 B = 3586.946957 C = 3966.501019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.066 0.934 4 C 0.033 3.967 5 C -0.500 4.500 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.952 3.048 10 H -0.288 1.288 11 H -0.270 1.270 12 H -0.274 1.274 13 N -0.533 5.533 14 C 0.061 3.939 15 C -0.136 4.136 16 C 0.103 3.897 17 H 0.097 0.903 18 F -0.223 7.223 19 C 0.077 3.923 20 H 0.039 0.961 21 N -0.840 5.840 22 C 0.067 3.933 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.057 0.943 26 H -0.007 1.007 27 H 0.003 0.997 28 H 0.258 0.742 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.352 0.648 34 H 0.355 0.645 35 H 0.078 0.922 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 2.250 14.087 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 H 0.085 0.915 4 C -0.004 4.004 5 C -0.539 4.539 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.214 1.214 11 H -0.196 1.196 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.067 4.067 15 C -0.175 4.175 16 C 0.066 3.934 17 H 0.115 0.885 18 F -0.203 7.203 19 C -0.036 4.036 20 H 0.057 0.943 21 N -0.373 5.373 22 C -0.061 4.061 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.011 0.989 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.096 0.904 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.140 1.931 13.754 14.810 hybrid contribution 1.278 0.020 -0.418 1.345 sum -3.862 1.951 13.336 14.021 Atomic orbital electron populations 1.22399 0.97060 1.01785 1.02164 1.21598 0.92142 0.97302 0.90049 0.91533 1.19107 0.95081 0.94681 0.91514 1.21460 0.93350 1.32424 1.06631 0.92509 1.25805 1.02569 0.95724 0.95797 1.70076 1.37051 1.37951 1.12989 0.85690 0.80989 0.78329 0.77121 1.21369 1.19567 1.19914 1.61878 1.60412 1.01873 1.01535 1.21944 0.96897 0.89589 0.98260 1.22127 1.02286 0.99972 0.93068 1.21717 0.97655 0.90969 0.83016 0.88520 1.92756 1.84979 1.84150 1.58454 1.21695 0.97759 0.92854 0.91252 0.94306 1.58612 1.67635 1.07568 1.03459 1.21949 0.98458 0.97637 0.88054 0.92916 0.91387 0.92361 0.98864 0.97923 0.93280 0.93667 0.91636 0.91731 0.88978 0.83483 0.83106 0.90367 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.55 8.50 71.98 0.61 -4.94 16 2 C 0.10 3.78 2.30 44.91 0.10 3.88 16 3 H 0.07 2.63 8.08 -2.38 -0.02 2.61 16 4 C 0.03 1.68 4.27 29.85 0.13 1.81 16 5 C -0.50 -27.87 8.84 25.60 0.23 -27.64 16 6 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -56.93 13.29 21.45 0.28 -56.64 16 9 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 10 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 13 N -0.53 -18.93 4.36 -871.11 -3.80 -22.73 16 14 C 0.06 2.06 4.64 86.33 0.40 2.46 16 15 C -0.14 -4.00 5.83 30.65 0.18 -3.83 16 16 C 0.10 2.71 3.57 30.67 0.11 2.82 16 17 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 18 F -0.22 -6.21 16.73 44.97 0.75 -5.46 16 19 C 0.08 1.99 3.18 44.97 0.14 2.13 16 20 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 21 N -0.84 -17.10 9.25 -168.46 -1.56 -18.66 16 22 C 0.07 1.89 4.57 86.32 0.39 2.28 16 23 H 0.05 1.66 6.52 -2.38 -0.02 1.65 16 24 H 0.07 1.81 6.65 -2.39 -0.02 1.80 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 27 H 0.00 0.14 6.05 -2.39 -0.01 0.12 16 28 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 29 H 0.05 1.36 6.62 -2.39 -0.02 1.35 16 30 H 0.07 2.68 5.93 -2.39 -0.01 2.66 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.35 6.58 8.70 -89.69 -0.78 5.80 16 34 H 0.35 6.04 8.99 -89.69 -0.81 5.23 16 35 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 36 H 0.05 1.30 6.73 -2.39 -0.02 1.28 16 Total: -1.00 -62.17 282.90 -0.04 -62.21 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -0.51 Total: 14.83 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 2.76 Total: -20.73 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -5.07 Total: -98.03 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.75 Total: -5.46 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -62.17 -0.04 -62.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.070 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds