Wall clock time and date at job start Sun Mar 29 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86797 * 120.00367 * 2 1 4 4 H 1.48498 * 109.47124 * 240.00596 * 3 2 1 5 5 H 1.48504 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47236 * 120.00052 * 3 2 1 7 7 C 1.39908 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99804 * 197.06126 * 7 2 1 9 9 C 1.41155 * 120.00141 * 17.07297 * 7 2 1 10 10 C 1.40872 * 120.16588 * 25.48917 * 9 7 2 11 11 C 1.36367 * 119.82978 * 179.73262 * 10 9 7 12 12 C 1.39483 * 120.16946 * 0.23041 * 11 10 9 13 13 N 1.39239 * 119.83391 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00071 * 35.86554 * 13 12 11 15 15 O 1.21282 * 120.00179 * 355.51344 * 14 13 12 16 16 C 1.50701 * 120.00104 * 175.51287 * 14 13 12 17 17 C 1.53005 * 117.49676 * 248.61988 * 16 14 13 18 18 C 1.52996 * 59.99969 * 252.50979 * 17 16 14 19 19 C 1.39484 * 120.33364 * 0.04276 * 12 11 10 20 20 C 1.36375 * 120.16474 * 359.96257 * 19 12 11 21 21 H 0.97004 * 120.00125 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.08160 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.91501 * 180.25683 * 11 10 9 24 24 H 0.97005 * 119.99715 * 215.85963 * 13 12 11 25 25 H 1.08997 * 115.54838 * 34.32336 * 16 14 13 26 26 H 1.08997 * 117.50219 * 0.02562 * 17 16 14 27 27 H 1.09000 * 117.49528 * 145.01697 * 17 16 14 28 28 H 1.09005 * 117.49942 * 252.51125 * 18 17 16 29 29 H 1.08998 * 117.51802 * 107.48210 * 18 17 16 30 30 H 1.07996 * 119.91837 * 179.97438 * 19 12 11 31 31 H 1.08003 * 120.08333 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0964 1.6963 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6963 1.2124 7 6 2.0082 -1.2117 0.0005 8 1 3.0525 -1.2322 0.2750 9 6 1.3490 -2.4073 -0.3578 10 6 0.2206 -2.3685 -1.2002 11 6 -0.4077 -3.5282 -1.5465 12 6 0.0614 -4.7503 -1.0649 13 7 -0.5851 -5.9303 -1.4234 14 6 -1.1081 -6.0638 -2.6583 15 8 -1.0879 -5.1283 -3.4298 16 6 -1.7181 -7.3756 -3.0805 17 6 -0.9866 -8.1810 -4.1563 18 6 -2.2950 -7.4637 -4.4948 19 6 1.1746 -4.7964 -0.2258 20 6 1.8133 -3.6449 0.1293 21 1 -0.4850 0.8401 0.0004 22 1 -0.1431 -1.4230 -1.5747 23 1 -1.2703 -3.5004 -2.1956 24 1 -0.6590 -6.6562 -0.7842 25 1 -2.2271 -7.9322 -2.2937 26 1 -0.0641 -7.7623 -4.5584 27 1 -1.0143 -9.2677 -4.0772 28 1 -3.1835 -8.0786 -4.6386 29 1 -2.2337 -6.5728 -5.1198 30 1 1.5318 -5.7463 0.1435 31 1 2.6754 -3.6821 0.7787 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126526.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:38 Heat of formation + Delta-G solvation = 6.126247 kcal Electronic energy + Delta-G solvation = -15165.060976 eV Core-core repulsion = 12604.777197 eV Total energy + Delta-G solvation = -2560.283779 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78652 -37.55622 -35.89083 -34.36572 -32.90411 -29.50183 -29.05368 -25.65905 -23.57702 -22.42689 -21.32346 -20.64489 -19.34566 -17.31187 -17.17021 -16.38244 -15.22403 -15.00195 -14.35511 -14.12663 -13.87899 -12.99533 -12.68831 -12.38453 -12.00288 -11.81836 -11.58438 -11.38332 -11.10267 -11.07926 -10.70685 -10.59408 -10.42321 -9.92783 -9.65246 -9.34787 -9.01932 -8.83319 -7.50686 -6.99007 -6.71888 -4.29104 2.55635 2.96893 3.08049 3.10932 3.12252 3.29590 3.68498 3.94532 4.01284 4.64440 4.79424 4.92361 4.96691 5.28370 5.55358 5.69609 5.78124 5.95964 6.14179 6.16678 6.42326 6.83631 7.01946 7.07046 7.17546 7.31284 7.61720 7.70769 7.98954 8.06883 8.23852 8.34518 8.64394 8.81825 8.89648 9.03164 10.20070 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.055090 B = 0.005464 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.138989 B = 5123.420803 C = 5408.740484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.156 4.156 11 C -0.086 4.086 12 C -0.009 4.009 13 N -0.647 5.647 14 C 0.526 3.474 15 O -0.532 6.532 16 C -0.190 4.190 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.216 4.216 21 H 0.281 0.719 22 H 0.120 0.880 23 H 0.106 0.894 24 H 0.395 0.605 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -10.578 -2.972 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.176 4.176 11 C -0.106 4.106 12 C -0.102 4.102 13 N -0.289 5.289 14 C 0.312 3.688 15 O -0.410 6.410 16 C -0.211 4.211 17 C -0.193 4.193 18 C -0.188 4.188 19 C -0.124 4.124 20 C -0.236 4.236 21 H 0.092 0.908 22 H 0.137 0.863 23 H 0.124 0.876 24 H 0.228 0.772 25 H 0.137 0.863 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.814 -9.751 -3.516 10.741 hybrid contribution 0.274 0.321 0.544 0.688 sum -2.540 -9.430 -2.972 10.208 Atomic orbital electron populations 1.69838 1.07589 1.29378 1.34877 1.25925 0.94741 1.01342 0.92299 0.86353 0.80127 0.80196 0.79958 1.18799 1.20327 1.19019 1.19519 0.97833 0.91238 1.40337 0.90415 1.17669 0.91366 0.92085 0.88529 1.20993 0.99329 0.96730 1.00571 1.20540 0.99399 0.91245 0.99394 1.17208 0.98773 0.84604 1.09577 1.42884 1.55843 1.17042 1.13126 1.19601 0.79020 0.88354 0.81788 1.90678 1.57159 1.40484 1.52631 1.22201 1.06499 0.97817 0.94624 1.22904 0.97207 0.98465 1.00687 1.22917 0.96825 1.03155 0.95893 1.20049 0.94770 0.97156 1.00424 1.20547 1.03777 0.92644 1.06639 0.90764 0.86270 0.87647 0.77211 0.86281 0.88284 0.88115 0.88261 0.87423 0.89194 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.87 10.97 55.55 0.61 -20.26 16 2 C 0.07 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.36 9.04 -37.85 -0.34 -12.70 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.11 2.89 5.57 -106.80 -0.59 2.30 16 10 C -0.16 -4.28 8.63 -39.26 -0.34 -4.62 16 11 C -0.09 -2.20 8.61 -39.79 -0.34 -2.55 16 12 C -0.01 -0.22 6.30 -83.57 -0.53 -0.74 16 13 N -0.65 -11.85 5.30 -9.74 -0.05 -11.90 16 14 C 0.53 9.60 7.44 -10.99 -0.08 9.52 16 15 O -0.53 -12.01 13.71 5.56 0.08 -11.94 16 16 C -0.19 -2.44 6.19 -91.77 -0.57 -3.01 16 17 C -0.16 -1.70 10.23 -26.73 -0.27 -1.98 16 18 C -0.15 -1.75 10.04 -26.73 -0.27 -2.01 16 19 C -0.10 -2.33 9.90 -39.79 -0.39 -2.72 16 20 C -0.22 -5.33 9.74 -39.26 -0.38 -5.71 16 21 H 0.28 6.76 8.30 -40.82 -0.34 6.43 16 22 H 0.12 3.38 6.20 -52.49 -0.33 3.05 16 23 H 0.11 2.73 6.26 -52.49 -0.33 2.40 16 24 H 0.39 5.65 8.82 -40.82 -0.36 5.29 16 25 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.46 7.67 -51.93 -0.40 1.06 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -30.53 271.55 -8.00 -38.53 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.50 Total: 10.01 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -4.20 Total: -22.40 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.56 Total: -32.16 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.53 -8.00 -38.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126526.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.661 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds