Wall clock time and date at job start Sun Mar 29 2020 21:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86797 * 120.00367 * 2 1 4 4 H 1.48498 * 109.47124 * 240.00596 * 3 2 1 5 5 H 1.48504 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47236 * 120.00052 * 3 2 1 7 7 C 1.39908 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99804 * 197.06126 * 7 2 1 9 9 C 1.41155 * 120.00141 * 17.07297 * 7 2 1 10 10 C 1.40872 * 120.16588 * 25.48917 * 9 7 2 11 11 C 1.36367 * 119.82978 * 179.73262 * 10 9 7 12 12 C 1.39483 * 120.16946 * 0.23041 * 11 10 9 13 13 N 1.39239 * 119.83391 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00071 * 35.86554 * 13 12 11 15 15 O 1.21282 * 120.00179 * 355.51344 * 14 13 12 16 16 C 1.50701 * 120.00104 * 175.51287 * 14 13 12 17 17 C 1.53005 * 117.49676 * 248.61988 * 16 14 13 18 18 C 1.52996 * 59.99969 * 252.50979 * 17 16 14 19 19 C 1.39484 * 120.33364 * 0.04276 * 12 11 10 20 20 C 1.36375 * 120.16474 * 359.96257 * 19 12 11 21 21 H 0.97004 * 120.00125 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.08160 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.91501 * 180.25683 * 11 10 9 24 24 H 0.97005 * 119.99715 * 215.85963 * 13 12 11 25 25 H 1.08997 * 115.54838 * 34.32336 * 16 14 13 26 26 H 1.08997 * 117.50219 * 0.02562 * 17 16 14 27 27 H 1.09000 * 117.49528 * 145.01697 * 17 16 14 28 28 H 1.09005 * 117.49942 * 252.51125 * 18 17 16 29 29 H 1.08998 * 117.51802 * 107.48210 * 18 17 16 30 30 H 1.07996 * 119.91837 * 179.97438 * 19 12 11 31 31 H 1.08003 * 120.08333 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0964 1.6963 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6963 1.2124 7 6 2.0082 -1.2117 0.0005 8 1 3.0525 -1.2322 0.2750 9 6 1.3490 -2.4073 -0.3578 10 6 0.2206 -2.3685 -1.2002 11 6 -0.4077 -3.5282 -1.5465 12 6 0.0614 -4.7503 -1.0649 13 7 -0.5851 -5.9303 -1.4234 14 6 -1.1081 -6.0638 -2.6583 15 8 -1.0879 -5.1283 -3.4298 16 6 -1.7181 -7.3756 -3.0805 17 6 -0.9866 -8.1810 -4.1563 18 6 -2.2950 -7.4637 -4.4948 19 6 1.1746 -4.7964 -0.2258 20 6 1.8133 -3.6449 0.1293 21 1 -0.4850 0.8401 0.0004 22 1 -0.1431 -1.4230 -1.5747 23 1 -1.2703 -3.5004 -2.1956 24 1 -0.6590 -6.6562 -0.7842 25 1 -2.2271 -7.9322 -2.2937 26 1 -0.0641 -7.7623 -4.5584 27 1 -1.0143 -9.2677 -4.0772 28 1 -3.1835 -8.0786 -4.6386 29 1 -2.2337 -6.5728 -5.1198 30 1 1.5318 -5.7463 0.1435 31 1 2.6754 -3.6821 0.7787 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008126526.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:37 Heat of formation + Delta-G solvation = -12.617342 kcal Electronic energy + Delta-G solvation = -15165.873759 eV Core-core repulsion = 12604.777197 eV Total energy + Delta-G solvation = -2561.096562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30335 -39.28346 -37.12663 -36.10777 -34.71822 -31.46516 -30.93107 -27.38007 -25.08209 -23.30526 -23.20892 -22.39427 -20.83923 -19.26309 -18.53523 -17.99522 -17.06907 -16.25690 -15.88468 -15.67414 -15.46180 -14.75101 -14.48021 -13.97192 -13.69847 -13.49034 -13.30443 -12.92726 -12.77604 -12.44939 -12.39608 -11.77420 -11.56459 -11.47019 -11.40940 -11.14452 -10.81329 -10.56288 -9.48056 -8.89078 -8.61507 -6.29694 0.79098 1.11761 1.37091 1.44051 1.50441 1.70960 2.20138 2.33562 2.71955 2.97600 3.69429 3.79605 3.92145 4.01907 4.25988 4.41784 4.46669 4.75494 4.90610 4.97058 5.05514 5.09378 5.18060 5.25458 5.28948 5.42733 5.66293 5.85864 6.06588 6.08925 6.31995 6.65815 6.74285 6.90657 6.98916 7.42889 8.32218 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.055090 B = 0.005464 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.138989 B = 5123.420803 C = 5408.740484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.074 3.926 10 C -0.182 4.182 11 C -0.102 4.102 12 C 0.001 3.999 13 N -0.639 5.639 14 C 0.518 3.482 15 O -0.584 6.584 16 C -0.195 4.195 17 C -0.138 4.138 18 C -0.152 4.152 19 C -0.098 4.098 20 C -0.224 4.224 21 H 0.288 0.712 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.418 0.582 25 H 0.158 0.842 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -12.923 -2.511 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.071 3.929 10 C -0.203 4.203 11 C -0.122 4.122 12 C -0.093 4.093 13 N -0.283 5.283 14 C 0.308 3.692 15 O -0.465 6.465 16 C -0.216 4.216 17 C -0.175 4.175 18 C -0.190 4.190 19 C -0.118 4.118 20 C -0.244 4.244 21 H 0.098 0.902 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.256 0.744 25 H 0.176 0.824 26 H 0.098 0.902 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.565 -12.154 -3.033 12.787 hybrid contribution 0.133 0.902 0.342 0.974 sum -2.432 -11.252 -2.691 11.822 Atomic orbital electron populations 1.69912 1.09223 1.30638 1.35582 1.26844 0.95478 1.04808 0.91198 0.85211 0.78717 0.75366 0.80173 1.18670 1.19338 1.17789 1.19815 0.98268 0.92319 1.42129 0.89991 1.18013 0.91854 0.93709 0.89310 1.20885 1.00735 0.96465 1.02167 1.20567 0.99362 0.92347 0.99892 1.17315 0.98582 0.85338 1.08045 1.42832 1.55300 1.16116 1.14098 1.20661 0.77772 0.89853 0.80935 1.90665 1.58904 1.42907 1.53978 1.22228 1.07703 0.95337 0.96308 1.23043 0.95926 1.00287 0.98243 1.23023 0.98850 1.02786 0.94314 1.20421 0.93714 0.98381 0.99236 1.20845 1.04392 0.92548 1.06630 0.90182 0.88639 0.88896 0.74428 0.82431 0.90190 0.84123 0.84794 0.90385 0.84655 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.40 10.97 21.82 0.24 -45.16 16 2 C 0.03 1.64 5.14 85.24 0.44 2.08 16 3 Si 0.99 39.31 29.59 68.60 2.03 41.34 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.50 -27.47 9.04 23.39 0.21 -27.26 16 8 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 9 C 0.07 4.15 5.57 -21.27 -0.12 4.03 16 10 C -0.18 -10.53 8.63 22.48 0.19 -10.34 16 11 C -0.10 -5.41 8.61 22.13 0.19 -5.22 16 12 C 0.00 0.03 6.30 38.57 0.24 0.27 16 13 N -0.64 -22.22 5.30 -303.11 -1.61 -23.82 16 14 C 0.52 18.38 7.44 87.66 0.65 19.03 16 15 O -0.58 -26.99 13.71 -3.04 -0.04 -27.04 16 16 C -0.19 -4.38 6.19 -11.54 -0.07 -4.46 16 17 C -0.14 -2.54 10.23 30.59 0.31 -2.22 16 18 C -0.15 -3.15 10.04 30.59 0.31 -2.84 16 19 C -0.10 -4.21 9.90 22.14 0.22 -3.99 16 20 C -0.22 -11.01 9.74 22.48 0.22 -10.79 16 21 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 22 H 0.10 5.83 6.20 -2.91 -0.02 5.81 16 23 H 0.09 5.09 6.26 -2.91 -0.02 5.07 16 24 H 0.42 10.53 8.82 -92.70 -0.82 9.72 16 25 H 0.16 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.08 2.10 7.67 -2.39 -0.02 2.08 16 30 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -70.63 271.55 3.75 -66.88 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.33 Total: 29.51 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 2.80 Total: -41.70 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -1.37 Total: -68.99 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -70.63 3.75 -66.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126526.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.259 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds