Wall clock time and date at job start Sun Mar 29 2020 22:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47469 * 270.00061 * 3 2 1 5 5 H 1.48497 * 109.46964 * 30.00460 * 3 2 1 6 6 H 1.48500 * 109.47322 * 150.00019 * 3 2 1 7 7 C 1.37873 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00092 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00427 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47370 * 179.97438 * 9 7 2 11 11 C 1.46892 * 111.00232 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.71053 * 324.46752 * 11 10 9 13 13 C 1.53318 * 109.68274 * 203.93397 * 11 10 9 14 14 C 1.52733 * 108.41003 * 170.46976 * 13 11 10 15 15 C 1.50625 * 110.59818 * 51.10449 * 14 13 11 16 16 C 1.38914 * 117.76000 * 162.37387 * 15 14 13 17 17 C 1.37932 * 120.54006 * 179.62325 * 16 15 14 18 18 C 1.38261 * 119.77556 * 359.43087 * 17 16 15 19 19 C 1.37932 * 119.77118 * 0.73582 * 18 17 16 20 20 C 1.37664 * 122.55573 * 341.99900 * 15 14 13 21 21 C 1.50626 * 122.55816 * 1.13055 * 20 15 14 22 22 H 0.96995 * 120.00184 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47190 * 59.99666 * 9 7 2 24 24 H 1.08998 * 109.46715 * 299.99511 * 9 7 2 25 25 H 1.00900 * 110.99725 * 303.95503 * 10 9 7 26 26 H 1.08998 * 109.67443 * 290.19911 * 13 11 10 27 27 H 1.08999 * 109.67730 * 50.70784 * 13 11 10 28 28 H 1.08997 * 109.25142 * 290.81513 * 14 13 11 29 29 H 1.09006 * 109.25028 * 171.38962 * 14 13 11 30 30 H 1.08002 * 119.72528 * 359.33653 * 16 15 14 31 31 H 1.08003 * 120.11215 * 179.70871 * 17 16 15 32 32 H 1.08008 * 120.11680 * 180.41518 * 18 17 16 33 33 H 1.08004 * 119.73059 * 179.69846 * 19 18 17 34 34 H 1.09001 * 109.25310 * 102.18735 * 21 20 15 35 35 H 1.09004 * 109.25306 * 221.65465 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 -0.0001 11 6 5.4697 -2.6182 -0.0001 12 1 5.8595 -1.7932 -0.5965 13 6 5.9507 -3.9509 -0.5859 14 6 7.4615 -3.8690 -0.7942 15 6 8.1453 -3.4013 0.4638 16 6 9.5118 -3.6232 0.5781 17 6 10.1971 -3.2115 1.7022 18 6 9.5214 -2.5622 2.7188 19 6 8.1639 -2.3441 2.6088 20 6 7.4704 -2.7656 1.4813 21 6 5.9873 -2.5067 1.4325 22 1 -0.4850 0.8400 0.0004 23 1 3.8746 -0.6807 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6255 -3.0954 0.7810 26 1 5.7189 -4.7608 0.1059 27 1 5.4573 -4.1315 -1.5409 28 1 7.6755 -3.1685 -1.6013 29 1 7.8410 -4.8545 -1.0644 30 1 10.0412 -4.1262 -0.2176 31 1 11.2587 -3.3917 1.7859 32 1 10.0538 -2.2315 3.5985 33 1 7.6359 -1.8412 3.4055 34 1 5.4742 -3.2372 2.0579 35 1 5.7848 -1.5045 1.8104 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035009904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:18 Heat of formation + Delta-G solvation = -10.865708 kcal Electronic energy + Delta-G solvation = -15590.449093 eV Core-core repulsion = 13165.261582 eV Total energy + Delta-G solvation = -2425.187511 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99028 -38.17317 -35.53731 -34.20714 -33.11927 -30.88759 -29.73902 -27.83076 -24.59448 -23.40953 -23.02620 -22.67063 -20.45349 -18.91342 -17.29380 -16.88964 -16.41967 -16.25214 -15.48499 -15.37622 -15.00290 -14.94070 -14.55707 -14.08686 -13.86494 -13.69903 -13.48235 -13.07479 -12.74573 -12.60389 -12.37066 -12.25346 -11.92010 -11.82424 -11.60752 -11.37771 -11.26815 -10.82677 -9.63967 -9.44019 -9.11917 -8.31825 -6.36103 0.47843 0.49116 1.33038 1.33891 1.44977 2.31870 2.86064 3.02192 3.40262 3.74933 3.86725 4.00641 4.09295 4.15634 4.30100 4.34980 4.51601 4.58466 4.64772 4.73774 4.78130 4.86560 4.91952 4.99946 5.11052 5.16277 5.21293 5.31998 5.37736 5.51143 5.63499 5.63755 5.79991 5.96521 6.16337 6.54719 6.65055 6.76113 7.29033 8.84974 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.038358 B = 0.005762 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.780541 B = 4858.587781 C = 5251.437243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.038 0.962 9 C 0.176 3.824 10 N -0.681 5.681 11 C 0.086 3.914 12 H 0.063 0.937 13 C -0.101 4.101 14 C -0.075 4.075 15 C -0.088 4.088 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.088 4.088 21 C -0.104 4.104 22 H 0.268 0.732 23 H -0.014 1.014 24 H 0.020 0.980 25 H 0.337 0.663 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.474 -6.159 2.890 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.567 4.567 8 H 0.057 0.943 9 C 0.048 3.952 10 N -0.310 5.310 11 C -0.024 4.024 12 H 0.081 0.919 13 C -0.139 4.139 14 C -0.112 4.112 15 C -0.088 4.088 16 C -0.143 4.143 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.088 4.088 21 C -0.143 4.143 22 H 0.077 0.923 23 H 0.004 0.996 24 H 0.038 0.962 25 H 0.155 0.845 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.247 -6.115 2.194 23.176 hybrid contribution -0.328 1.158 1.061 1.604 sum 21.919 -4.957 3.255 22.707 Atomic orbital electron populations 1.70044 1.08105 1.28231 1.52302 1.25841 0.95604 1.03157 0.94139 0.85700 0.79255 0.78617 0.79278 1.19037 1.20440 1.17728 1.21351 0.91383 0.93481 1.50442 0.94320 1.19748 0.93636 0.87386 0.94476 1.60522 1.06376 1.14409 1.49675 1.21628 0.87395 0.98867 0.94553 0.91869 1.21477 0.95067 0.95792 1.01537 1.20493 0.93784 1.02516 0.94397 1.19892 0.94537 0.98433 0.95931 1.21449 0.93225 1.00628 0.99048 1.21410 1.01042 0.98342 0.93704 1.21342 0.93927 0.99381 1.00068 1.21374 0.95502 1.01019 0.97669 1.19677 0.94929 0.99164 0.95071 1.21164 0.92889 1.01395 0.98848 0.92304 0.99634 0.96165 0.84521 0.91838 0.90943 0.90202 0.88502 0.83924 0.83548 0.84145 0.86133 0.90596 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.78 13.96 21.45 0.30 -59.49 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.95 44.80 27.47 68.60 1.88 46.69 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 7 C -0.53 -31.18 9.87 25.60 0.25 -30.93 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 C 0.18 8.61 4.32 85.56 0.37 8.98 16 10 N -0.68 -28.23 6.25 -495.49 -3.10 -31.33 16 11 C 0.09 2.85 2.48 44.93 0.11 2.96 16 12 H 0.06 2.22 7.78 -2.38 -0.02 2.20 16 13 C -0.10 -2.72 5.60 30.61 0.17 -2.55 16 14 C -0.07 -1.62 5.67 29.74 0.17 -1.45 16 15 C -0.09 -2.10 5.74 -19.86 -0.11 -2.21 16 16 C -0.13 -2.45 9.61 22.36 0.21 -2.23 16 17 C -0.13 -2.29 10.05 22.20 0.22 -2.06 16 18 C -0.13 -2.57 10.05 22.20 0.22 -2.35 16 19 C -0.14 -3.35 9.61 22.36 0.21 -3.13 16 20 C -0.09 -2.37 5.74 -19.86 -0.11 -2.49 16 21 C -0.10 -3.18 4.97 29.74 0.15 -3.03 16 22 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 23 H -0.01 -0.68 6.68 -2.39 -0.02 -0.69 16 24 H 0.02 1.00 7.49 -2.39 -0.02 0.98 16 25 H 0.34 13.72 8.35 -89.69 -0.75 12.97 16 26 H 0.06 1.67 8.10 -2.39 -0.02 1.66 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.65 8.13 -2.38 -0.02 1.63 16 30 H 0.14 2.02 8.05 -2.91 -0.02 2.00 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.12 2.75 8.05 -2.91 -0.02 2.72 16 34 H 0.08 2.26 7.94 -2.39 -0.02 2.25 16 35 H 0.06 1.89 7.68 -2.39 -0.02 1.88 16 Total: -1.00 -66.84 284.62 1.68 -65.16 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.26 Total: 18.39 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.33 Total: -39.42 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -2.80 Total: -90.82 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -66.84 1.68 -65.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035009904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.292 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds