Wall clock time and date at job start Sun Mar 29 2020 21:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99418 * 2 1 4 4 H 1.48505 * 109.47189 * 269.99627 * 3 2 1 5 5 H 1.48499 * 109.47712 * 29.99955 * 3 2 1 6 6 H 1.48508 * 109.47237 * 149.99868 * 3 2 1 7 7 C 1.37873 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47018 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46869 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46958 * 184.82865 * 11 10 9 13 13 C 1.46467 * 110.99627 * 299.87211 * 12 11 10 14 14 C 1.53258 * 109.85849 * 197.76616 * 13 12 11 15 15 S 1.81897 * 108.50473 * 298.00171 * 14 13 12 16 16 O 1.42098 * 109.46842 * 167.14864 * 15 14 13 17 17 C 1.81901 * 101.91638 * 51.30305 * 15 14 13 18 18 C 1.46457 * 110.99978 * 65.85882 * 12 11 10 19 19 H 0.96996 * 120.00700 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46858 * 59.99963 * 9 7 2 21 21 H 1.09009 * 109.47196 * 300.00339 * 9 7 2 22 22 H 1.08993 * 109.47018 * 60.00493 * 10 9 7 23 23 H 1.08998 * 109.47336 * 299.99623 * 10 9 7 24 24 H 1.09005 * 109.47110 * 64.82623 * 11 10 9 25 25 H 1.09004 * 109.47323 * 304.82912 * 11 10 9 26 26 H 1.09007 * 109.40561 * 77.65379 * 13 12 11 27 27 H 1.08997 * 109.41538 * 317.89095 * 13 12 11 28 28 H 1.08996 * 109.62988 * 178.29908 * 14 13 12 29 29 H 1.08998 * 109.62660 * 57.70851 * 14 13 12 30 30 H 1.09002 * 109.63060 * 68.39738 * 17 15 14 31 31 H 1.08994 * 109.63323 * 188.98780 * 17 15 14 32 32 H 1.09005 * 109.41098 * 42.11627 * 18 12 11 33 33 H 1.09003 * 109.40804 * 282.35294 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2456 -3.6620 0.0027 11 6 1.4806 -4.9871 0.0033 12 7 2.4311 -6.1010 0.1209 13 6 3.3744 -6.1066 -0.9996 14 6 4.0482 -7.4789 -1.1061 15 16 4.9849 -7.7824 0.4234 16 8 5.3690 -9.1493 0.4801 17 6 3.7343 -7.4504 1.7019 18 6 3.1037 -6.0820 1.4217 19 1 -0.4851 0.8400 -0.0004 20 1 0.6243 -2.5575 -0.8880 21 1 0.6248 -2.5563 0.8920 22 1 2.8721 -3.6034 0.8927 23 1 2.8722 -3.6050 -0.8873 24 1 0.9207 -5.0838 -0.9270 25 1 0.7904 -5.0078 0.8466 26 1 4.1340 -5.3418 -0.8373 27 1 2.8392 -5.8931 -1.9248 28 1 4.7267 -7.4885 -1.9590 29 1 3.2888 -8.2510 -1.2298 30 1 2.9646 -8.2216 1.6703 31 1 4.2077 -7.4414 2.6836 32 1 2.3778 -5.8513 2.2015 33 1 3.8820 -5.3189 1.4159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049691766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:39 Heat of formation + Delta-G solvation = -46.331628 kcal Electronic energy + Delta-G solvation = -14332.572911 eV Core-core repulsion = 11905.458339 eV Total energy + Delta-G solvation = -2427.114572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.47475 -35.69875 -33.88791 -31.94049 -31.54895 -29.37443 -25.85229 -23.68680 -23.19166 -21.30170 -19.74886 -17.37102 -16.51159 -15.81061 -15.44115 -15.11500 -14.92819 -14.56454 -14.26073 -13.86245 -13.33945 -12.65548 -12.37189 -12.17392 -12.08797 -11.79601 -11.55067 -11.16494 -11.12560 -10.83841 -10.73488 -10.55602 -9.83020 -9.71867 -9.52811 -9.21832 -8.38695 -8.31103 -8.03448 -6.03390 -4.06396 1.54899 2.46845 3.29007 3.35796 3.38261 3.70862 3.97040 4.42664 4.84496 4.91682 5.09729 5.20988 5.23059 5.32355 5.38548 5.65457 5.78054 5.85934 5.86859 5.90603 6.08472 6.19599 6.50706 6.67437 6.95055 7.23652 7.26882 7.62082 7.75907 7.95595 8.38203 9.00751 9.58174 11.07652 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.053111 B = 0.004899 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.072898 B = 5714.532185 C = 5848.940512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.146 4.146 11 C 0.058 3.942 12 N -0.561 5.561 13 C 0.078 3.922 14 C -0.429 4.429 15 S 1.223 4.777 16 O -0.866 6.866 17 C -0.429 4.429 18 C 0.077 3.923 19 H 0.260 0.740 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -10.729 0.703 13.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.185 4.185 11 C -0.069 4.069 12 N -0.285 5.285 13 C -0.051 4.051 14 C -0.567 4.567 15 S 1.422 4.578 16 O -0.862 6.862 17 C -0.567 4.567 18 C -0.052 4.052 19 H 0.070 0.930 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.102 0.898 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.145 -11.369 0.796 14.613 hybrid contribution -1.053 0.326 -0.171 1.115 sum 8.093 -11.043 0.625 13.705 Atomic orbital electron populations 1.69959 1.06075 1.26635 1.50806 1.25027 0.94827 0.99267 0.95317 0.86615 0.79854 0.83539 0.78108 1.20676 1.21244 1.19865 1.21243 0.92958 0.91108 1.50631 0.92766 1.19028 0.93898 0.91287 0.97212 1.22268 1.00045 0.95638 1.00519 1.22351 0.94102 0.87877 1.02559 1.61428 1.18986 1.46499 1.01590 1.21622 0.94921 0.93140 0.95448 1.27568 1.09730 1.03584 1.15859 1.70395 0.96865 1.02598 0.87957 1.93080 1.72445 1.36416 1.84215 1.27563 1.12652 1.03657 1.12837 1.21631 0.98312 0.93185 0.92073 0.92985 0.96624 0.96636 0.93049 0.93068 0.90952 0.90864 0.92547 0.89815 0.86797 0.88995 0.88990 0.86786 0.89786 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.15 -2.67 4.53 -26.73 -0.12 -2.80 16 11 C 0.06 0.90 5.23 -3.82 -0.02 0.88 16 12 N -0.56 -7.37 4.58 -235.03 -1.08 -8.45 16 13 C 0.08 0.89 4.47 -3.93 -0.02 0.87 16 14 C -0.43 -4.45 6.67 37.29 0.25 -4.20 16 15 S 1.22 12.40 13.81 -107.50 -1.48 10.91 16 16 O -0.87 -14.25 18.14 -35.23 -0.64 -14.89 16 17 C -0.43 -4.46 6.67 37.29 0.25 -4.21 16 18 C 0.08 0.88 4.67 -3.93 -0.02 0.86 16 19 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 20 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 22 H 0.05 0.91 6.74 -51.93 -0.35 0.56 16 23 H 0.05 0.91 7.09 -51.93 -0.37 0.55 16 24 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 25 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 26 H 0.06 0.58 7.22 -51.93 -0.37 0.20 16 27 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 33 H 0.06 0.58 7.05 -51.93 -0.37 0.21 16 LS Contribution 277.21 15.07 4.18 4.18 Total: -1.00 -34.15 277.21 -8.72 -42.88 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -5.18 Total: -3.86 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -0.23 Total: -21.17 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: -0.34 Total: -34.07 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.64 Total: -14.89 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 12.40 SS G_CDS: -1.48 Total: 10.91 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.15 -8.72 -42.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049691766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.456 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds