Wall clock time and date at job start Sun Mar 29 2020 21:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48494 * 109.47470 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47308 * 300.00404 * 3 2 1 6 6 H 1.48507 * 109.46839 * 59.99736 * 3 2 1 7 7 C 1.38801 * 120.00565 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00526 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99407 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99570 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46792 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47261 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47334 * 174.85870 * 12 11 10 14 14 C 1.47897 * 110.99563 * 175.70796 * 13 12 11 15 15 C 1.54001 * 107.05520 * 214.15470 * 14 13 12 16 16 C 1.54591 * 105.13894 * 1.22804 * 15 14 13 17 17 H 1.09004 * 110.72298 * 263.41918 * 16 15 14 18 18 O 1.42898 * 110.72191 * 140.31722 * 16 15 14 19 19 C 1.48532 * 110.99644 * 58.31313 * 13 12 11 20 20 H 0.96999 * 120.00692 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46952 * 299.99974 * 10 9 7 22 22 H 1.08998 * 109.47285 * 60.00149 * 10 9 7 23 23 H 1.08999 * 109.47253 * 299.99670 * 11 10 9 24 24 H 1.09006 * 109.47491 * 59.99969 * 11 10 9 25 25 H 1.09000 * 109.46743 * 294.85879 * 12 11 10 26 26 H 1.08995 * 109.46968 * 54.85576 * 12 11 10 27 27 H 1.08995 * 109.92286 * 333.50567 * 14 13 12 28 28 H 1.09001 * 109.91993 * 94.80675 * 14 13 12 29 29 H 1.08999 * 110.30655 * 120.14766 * 15 14 13 30 30 H 1.09003 * 110.30788 * 242.20910 * 15 14 13 31 31 H 0.96694 * 114.00416 * 61.45270 * 18 16 15 32 32 H 1.09002 * 110.66880 * 278.15076 * 19 13 12 33 33 H 1.08997 * 110.67198 * 41.29134 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9795 -5.3242 0.0018 12 6 3.1515 -6.3077 0.0019 13 7 2.6400 -7.6791 0.1264 14 6 3.7378 -8.6652 0.0273 15 6 3.1662 -9.9079 -0.6801 16 6 1.6965 -9.5504 -0.9995 17 1 1.0285 -9.9439 -0.2333 18 8 1.3262 -10.0394 -2.2902 19 6 1.7051 -8.0011 -0.9819 20 1 -0.4851 0.8400 0.0004 21 1 3.1239 -3.7316 -0.8892 22 1 3.1253 -3.7309 0.8908 23 1 1.3713 -5.4842 0.8921 24 1 1.3704 -5.4844 -0.8879 25 1 3.7074 -6.2105 -0.9306 26 1 3.8101 -6.0878 0.8421 27 1 4.5585 -8.2498 -0.5574 28 1 4.0872 -8.9334 1.0244 29 1 3.7160 -10.1059 -1.6002 30 1 3.2115 -10.7737 -0.0193 31 1 1.3800 -11.0010 -2.3768 32 1 0.7087 -7.6133 -0.7698 33 1 2.0790 -7.6078 -1.9272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:39 Heat of formation + Delta-G solvation = -85.959451 kcal Electronic energy + Delta-G solvation = -13809.675764 eV Core-core repulsion = 11380.842801 eV Total energy + Delta-G solvation = -2428.832963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30717 -37.31896 -34.89429 -34.59172 -31.11718 -29.54544 -27.86118 -26.24097 -23.11982 -22.02221 -21.46628 -19.55541 -18.31718 -17.22379 -16.90634 -16.72462 -16.20730 -15.78526 -15.20639 -14.82593 -14.37286 -14.25714 -14.04243 -13.42905 -13.30388 -13.02487 -12.91880 -12.75282 -12.52322 -12.28936 -12.17869 -11.76144 -11.50192 -11.33877 -11.16020 -10.93822 -10.33268 -9.50092 -8.68256 -8.38107 -6.14987 1.31138 1.38325 1.49353 1.72978 2.27372 2.77376 2.96200 3.28426 3.40222 3.61816 3.81272 3.97292 4.07055 4.17850 4.25333 4.31121 4.43850 4.61202 4.69625 4.71554 4.77612 4.82480 4.89981 5.01216 5.14869 5.15632 5.25529 5.39108 5.82707 5.94885 6.17603 6.88930 7.03999 8.71761 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.064383 B = 0.004222 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.793271 B = 6630.777901 C = 6889.152371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.200 6.200 10 C -0.087 4.087 11 C -0.084 4.084 12 C 0.062 3.938 13 N -0.522 5.522 14 C 0.032 3.968 15 C -0.155 4.155 16 C 0.101 3.899 17 H 0.081 0.919 18 O -0.581 6.581 19 C 0.034 3.966 20 H 0.272 0.728 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.079 0.921 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 -19.597 -0.952 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.029 5.971 10 C -0.237 4.237 11 C -0.123 4.123 12 C -0.067 4.067 13 N -0.247 5.247 14 C -0.096 4.096 15 C -0.193 4.193 16 C 0.042 3.958 17 H 0.099 0.901 18 O -0.390 6.390 19 C -0.094 4.094 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.249 0.751 32 H 0.097 0.903 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.966 -19.091 -0.559 20.009 hybrid contribution 1.971 0.963 -0.695 2.301 sum 7.937 -18.128 -1.254 19.829 Atomic orbital electron populations 1.70160 1.07743 1.28535 1.48005 1.26088 0.96038 1.03166 0.93679 0.84942 0.78410 0.76515 0.78336 1.18621 1.19636 1.19575 1.23081 0.94752 0.91941 1.58895 0.90878 1.84671 1.14123 1.01285 1.97040 1.23148 1.00160 0.97358 1.02987 1.21173 0.97933 0.90654 1.02521 1.22213 0.96050 0.87379 1.01087 1.64762 1.14763 1.02624 1.42577 1.22930 0.93008 0.91983 1.01679 1.23108 0.95833 0.98583 1.01749 1.22657 0.95174 0.93007 0.85009 0.90095 1.86468 1.90852 1.28983 1.32653 1.23138 0.98074 0.95198 0.92952 0.91925 0.92090 0.91567 0.91345 0.92315 0.94347 0.89543 0.93387 0.88923 0.90109 0.88431 0.75072 0.90282 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.65 13.22 21.65 0.29 -55.37 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 1.00 44.46 29.55 68.60 2.03 46.48 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.77 9.50 67.95 0.65 -31.12 16 8 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 9 S -0.20 -10.95 21.44 -56.49 -1.21 -12.16 16 10 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 11 C -0.08 -2.85 4.90 30.59 0.15 -2.70 16 12 C 0.06 1.69 4.84 86.30 0.42 2.10 16 13 N -0.52 -12.70 5.35 -883.01 -4.73 -17.43 16 14 C 0.03 0.58 6.70 86.45 0.58 1.16 16 15 C -0.15 -2.23 6.69 31.47 0.21 -2.02 16 16 C 0.10 1.87 4.44 31.80 0.14 2.01 16 17 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 18 O -0.58 -10.75 13.40 -148.98 -2.00 -12.74 16 19 C 0.03 0.85 5.09 86.65 0.44 1.29 16 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 21 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 22 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.06 2.06 7.18 -2.38 -0.02 2.05 16 25 H 0.04 1.02 7.97 -2.39 -0.02 1.00 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 0.87 7.67 -2.39 -0.02 0.86 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.40 3.32 9.11 -74.06 -0.67 2.64 16 32 H 0.08 2.13 7.77 -2.39 -0.02 2.11 16 33 H 0.04 1.14 8.02 -2.39 -0.02 1.12 16 Total: -1.00 -69.84 286.50 -1.76 -71.60 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.40 Total: 10.76 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.46 Total: -31.14 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -4.44 Total: -72.80 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -2.00 Total: -12.74 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -10.95 SS G_CDS: -1.21 Total: -12.16 kcal Total: -69.84 -1.76 -71.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.360 kcal (2) G-P(sol) polarization free energy of solvation -69.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds