Wall clock time and date at job start Sun Mar 29 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47101 * 2 1 4 4 C 1.46497 * 119.99972 * 269.99316 * 3 2 1 5 5 C 1.50699 * 109.47335 * 270.00218 * 4 3 2 6 6 H 1.07994 * 119.99808 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99932 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00022 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46898 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47285 * 120.00024 * 9 7 5 12 12 H 1.48499 * 109.47091 * 239.99963 * 9 7 5 13 13 C 1.38981 * 120.00052 * 89.99957 * 3 2 1 14 14 C 1.39418 * 119.63086 * 5.01591 * 13 3 2 15 15 C 1.38316 * 119.31507 * 179.97438 * 14 13 3 16 16 C 1.38738 * 118.60441 * 359.72868 * 15 14 13 17 17 C 1.39262 * 119.21297 * 0.53635 * 16 15 14 18 18 C 1.43205 * 119.69098 * 179.73023 * 17 16 15 19 19 N 7.10439 * 106.02905 * 19.08262 * 2 1 3 20 20 N 1.32114 * 119.62951 * 185.00139 * 13 3 2 21 21 H 1.08992 * 109.47170 * 300.00258 * 1 2 3 22 22 H 1.09001 * 109.46600 * 60.00098 * 1 2 3 23 23 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46963 * 239.99268 * 2 1 3 25 25 H 1.09001 * 109.46600 * 119.99901 * 2 1 3 26 26 H 1.09008 * 109.46925 * 30.00401 * 4 3 2 27 27 H 1.09003 * 109.46877 * 150.00142 * 4 3 2 28 28 H 0.97007 * 120.00165 * 180.02562 * 8 7 5 29 29 H 1.07996 * 120.34281 * 359.95986 * 14 13 3 30 30 H 1.07999 * 120.69919 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.39469 * 180.26872 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6860 1.8349 -1.7036 6 1 4.3428 1.2301 -1.0960 7 6 4.1494 2.3895 -2.8778 8 7 3.3494 3.1255 -3.6180 9 14 5.9134 2.0953 -3.4173 10 1 6.6010 1.2404 -2.4166 11 1 5.9205 1.4161 -4.7378 12 1 6.6212 3.3963 -3.5261 13 6 2.2500 2.0364 1.2036 14 6 2.1163 1.3403 2.4042 15 6 2.3489 1.9986 3.5982 16 6 2.7152 3.3362 3.5588 17 6 2.8258 3.9746 2.3261 18 6 3.1975 5.3566 2.2738 19 7 3.4918 6.4530 2.2323 20 7 2.5948 3.3117 1.1972 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5819 1.6876 -2.0284 27 1 2.0957 3.1410 -1.1384 28 1 3.6753 3.5154 -4.4443 29 1 1.8338 0.2980 2.4019 30 1 2.2522 1.4810 4.5411 31 1 2.9080 3.8771 4.4735 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081595032.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:18 Heat of formation + Delta-G solvation = 76.618972 kcal Electronic energy + Delta-G solvation = -15397.630529 eV Core-core repulsion = 12872.696295 eV Total energy + Delta-G solvation = -2524.934234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96943 -36.85633 -35.80402 -32.87278 -32.25951 -30.98159 -29.55687 -26.66845 -24.52006 -23.21746 -22.77248 -20.56836 -18.52597 -16.70911 -16.28470 -15.88389 -15.28262 -14.70582 -14.41797 -13.90497 -13.68634 -13.27456 -12.78481 -12.70891 -12.41700 -12.31087 -12.06639 -11.94157 -11.57025 -11.17853 -10.94196 -10.67038 -10.53882 -10.16053 -9.99239 -9.49287 -9.11438 -8.94004 -8.43794 -6.92973 -6.03008 -4.09832 1.06709 1.82010 2.82100 3.27054 3.28504 3.36867 3.39799 3.65859 4.07927 4.39629 4.45708 5.01319 5.22196 5.29578 5.38857 5.44437 5.52260 5.60990 5.70776 5.81386 6.00912 6.16572 6.24994 6.43437 6.51697 6.70158 7.04131 7.44447 7.68659 7.75339 7.89770 8.18017 8.22936 8.63379 8.95606 9.54941 11.02470 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.009524 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.535419 B = 2939.152880 C = 3945.854978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.583 5.583 4 C 0.251 3.749 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.428 3.572 14 C -0.232 4.232 15 C -0.036 4.036 16 C -0.209 4.209 17 C 0.239 3.761 18 C 0.280 3.720 19 N -0.410 5.410 20 N -0.496 5.496 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.262 0.738 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -6.875 12.156 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.290 5.290 4 C 0.131 3.869 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.188 3.812 14 C -0.259 4.259 15 C -0.061 4.061 16 C -0.237 4.237 17 C 0.098 3.902 18 C -0.037 4.037 19 N -0.086 5.086 20 N -0.215 5.215 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.266 -4.795 10.847 12.603 hybrid contribution 0.856 -0.947 0.230 1.297 sum -3.409 -5.742 11.077 12.934 Atomic orbital electron populations 1.22228 0.96768 1.01380 1.02459 1.21403 0.93393 0.82905 1.02746 1.47256 1.65116 1.12232 1.04360 1.19346 0.96021 0.93855 0.77649 1.21482 0.96940 1.31769 1.06194 0.92502 1.24915 0.97672 0.94978 0.96443 1.69937 1.35522 1.33457 1.14298 0.86500 0.84865 0.78050 0.78357 1.19833 1.20980 1.20934 1.18215 0.89000 0.87176 0.86789 1.21656 1.10813 1.01445 0.92016 1.21080 0.93948 0.93308 0.97776 1.21429 1.09137 0.96208 0.96884 1.16029 0.98177 0.86385 0.89648 1.25225 0.93569 0.92087 0.92843 1.81153 1.08125 1.11723 1.07647 1.67151 1.17353 1.08459 1.28513 0.92856 0.92115 0.92158 0.89767 0.91493 0.95245 0.93187 0.92798 0.84813 0.84773 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.12 1.82 5.97 -4.04 -0.02 1.80 16 3 N -0.58 -11.60 2.57 -175.20 -0.45 -12.05 16 4 C 0.25 6.25 5.22 -5.20 -0.03 6.23 16 5 C -0.52 -14.41 9.39 -34.44 -0.32 -14.73 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.43 8.06 7.37 -155.18 -1.14 6.92 16 14 C -0.23 -3.30 9.27 -39.11 -0.36 -3.66 16 15 C -0.04 -0.42 10.15 -39.37 -0.40 -0.82 16 16 C -0.21 -2.78 9.79 -39.02 -0.38 -3.16 16 17 C 0.24 4.16 6.58 -85.08 -0.56 3.60 16 18 C 0.28 5.08 15.53 -22.47 -0.35 4.73 16 19 N -0.41 -7.87 18.54 41.83 0.78 -7.10 16 20 N -0.50 -10.31 8.99 -10.34 -0.09 -10.41 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 25 H 0.07 0.85 5.97 -51.93 -0.31 0.54 16 26 H 0.03 0.76 8.07 -51.92 -0.42 0.34 16 27 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.13 1.56 6.01 -52.49 -0.32 1.24 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 281.29 15.07 4.24 4.24 Total: -1.00 -31.14 281.29 -6.60 -37.74 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: -3.50 Total: -4.37 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -3.29 Total: 0.73 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.97 Total: -55.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.14 -6.60 -37.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081595032.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.363 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds