Wall clock time and date at job start Sun Mar 29 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40027 * 120.97898 * 80.55441 * 3 2 1 5 5 C 1.37902 * 119.07865 * 179.97438 * 4 3 2 6 6 N 1.31958 * 121.12326 * 0.02562 * 5 4 3 7 7 C 1.31645 * 122.18339 * 359.97438 * 6 5 4 8 8 C 1.39048 * 120.77702 * 359.73940 * 7 6 5 9 9 N 1.39069 * 120.60405 * 180.26717 * 8 7 6 10 10 C 1.46495 * 120.00281 * 0.26691 * 9 8 7 11 11 C 1.52994 * 109.47416 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47491 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47468 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00186 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00279 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99528 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00187 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46892 * 60.00187 * 17 15 13 19 19 H 1.48500 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46893 * 300.00289 * 17 15 13 21 21 H 1.07997 * 120.45847 * 359.95466 * 4 3 2 22 22 H 1.07995 * 119.43445 * 179.97438 * 5 4 3 23 23 H 1.08007 * 119.61308 * 180.02562 * 7 6 5 24 24 H 0.97001 * 119.99940 * 180.27246 * 9 8 7 25 25 H 1.09003 * 109.47310 * 300.00118 * 10 9 8 26 26 H 1.08996 * 109.47249 * 60.00153 * 10 9 8 27 27 H 1.09003 * 109.47066 * 299.99799 * 11 10 9 28 28 H 1.09004 * 109.47421 * 60.00247 * 11 10 9 29 29 H 1.09003 * 109.46673 * 299.99882 * 12 11 10 30 30 H 1.08996 * 109.47340 * 59.99626 * 12 11 10 31 31 H 0.97001 * 119.99752 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2888 -0.1961 -1.1843 5 6 4.6671 -0.1874 -1.1392 6 7 5.3112 0.0019 -0.0032 7 6 4.6811 0.1913 1.1370 8 6 3.2916 0.2047 1.1884 9 7 2.6297 0.4106 2.3940 10 6 3.3967 0.6218 3.6241 11 6 2.4349 0.8212 4.7970 12 6 3.2359 1.0424 6.0817 13 6 2.2886 1.2382 7.2371 14 1 1.2217 1.2084 7.0717 15 6 2.7837 1.4555 8.5054 16 7 4.0828 1.4914 8.7069 17 14 1.6093 1.6990 9.9376 18 1 0.7550 0.4935 10.0876 19 1 2.3868 1.9123 11.1846 20 1 0.7524 2.8839 9.6790 21 1 2.7725 -0.3527 -2.1198 22 1 5.2288 -0.3389 -2.0491 23 1 5.2501 0.3426 2.0425 24 1 1.6600 0.4143 2.4204 25 1 4.0254 -0.2481 3.8141 26 1 4.0240 1.5063 3.5138 27 1 1.8059 1.6910 4.6073 28 1 1.8078 -0.0636 4.9073 29 1 3.8652 0.1729 6.2716 30 1 3.8627 1.9273 5.9712 31 1 4.4311 1.6446 9.5991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094155632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:20 Heat of formation + Delta-G solvation = 48.679066 kcal Electronic energy + Delta-G solvation = -14544.792429 eV Core-core repulsion = 12018.646630 eV Total energy + Delta-G solvation = -2526.145799 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50253 -36.95792 -36.57948 -33.91318 -32.61547 -31.69075 -29.44256 -26.58152 -25.04989 -23.62929 -22.06603 -20.69019 -19.26618 -17.26993 -16.81895 -16.18731 -15.32662 -15.26133 -14.59671 -14.40565 -14.37053 -14.25849 -13.29624 -13.28818 -13.04746 -12.39822 -12.33931 -12.01599 -11.83171 -11.02969 -10.86226 -10.65957 -10.63507 -9.93318 -9.74869 -9.70131 -9.57848 -9.23658 -8.43991 -7.72273 -6.09142 -4.12337 0.58674 1.16426 2.44015 2.90124 3.19478 3.28309 3.33209 3.35744 3.65853 3.79699 4.38828 4.45871 4.58835 4.78857 5.06085 5.27100 5.34159 5.41025 5.50819 5.61077 5.82618 5.90297 6.29758 6.40348 6.48742 6.82782 6.99289 7.27864 7.40078 7.52360 7.63719 7.88446 7.89387 8.29714 8.93542 9.52521 11.02026 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.040760 B = 0.004424 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.777904 B = 6327.614907 C = 6988.640382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.259 3.741 3 C -0.088 4.088 4 C -0.072 4.072 5 C 0.021 3.979 6 N -0.424 5.424 7 C 0.037 3.963 8 C 0.223 3.777 9 N -0.719 5.719 10 C 0.110 3.890 11 C -0.123 4.123 12 C 0.026 3.974 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 H 0.140 0.860 22 H 0.159 0.841 23 H 0.166 0.834 24 H 0.402 0.598 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -2.956 -17.318 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.056 4.056 3 C -0.105 4.105 4 C -0.094 4.094 5 C -0.135 4.135 6 N -0.132 5.132 7 C -0.130 4.130 8 C 0.108 3.892 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.161 4.161 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.158 0.842 22 H 0.176 0.824 23 H 0.184 0.816 24 H 0.237 0.763 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.725 -2.898 -16.982 17.243 hybrid contribution -1.532 0.152 0.884 1.775 sum -0.807 -2.746 -16.099 16.351 Atomic orbital electron populations 1.81284 1.11764 1.09658 1.06672 1.25398 0.92321 0.93580 0.94287 1.15740 0.84675 1.15830 0.94235 1.21947 0.95352 0.95502 0.96630 1.22310 0.90869 1.03904 0.96439 1.67378 1.41003 1.06422 0.98383 1.22495 0.88735 1.04442 0.97284 1.19000 0.93451 0.91123 0.85664 1.45189 1.09196 1.74619 1.05177 1.21912 0.95569 1.01229 0.82526 1.21894 0.98181 1.01032 0.94956 1.19020 0.95229 0.97447 0.89492 1.21146 0.92985 1.49634 0.92642 0.92736 1.25005 0.95099 0.95212 0.98951 1.69938 1.11495 1.49493 1.22300 0.86640 0.80892 0.78750 0.81635 1.20219 1.21180 1.20214 0.84234 0.82366 0.81648 0.76311 0.91278 0.91274 0.92589 0.92581 0.96159 0.96158 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.97 18.54 41.83 0.78 -5.20 16 2 C 0.26 3.20 14.27 -22.47 -0.32 2.88 16 3 C -0.09 -0.96 5.78 -106.40 -0.62 -1.58 16 4 C -0.07 -0.62 9.86 -39.03 -0.38 -1.00 16 5 C 0.02 0.19 11.16 -17.62 -0.20 -0.01 16 6 N -0.42 -4.88 10.33 -13.14 -0.14 -5.01 16 7 C 0.04 0.43 10.49 -17.33 -0.18 0.25 16 8 C 0.22 2.64 6.68 -83.38 -0.56 2.08 16 9 N -0.72 -9.20 5.65 -58.30 -0.33 -9.53 16 10 C 0.11 1.58 4.92 -4.05 -0.02 1.56 16 11 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 12 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 13 C -0.53 -14.29 9.11 -34.44 -0.31 -14.61 16 14 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 22 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 23 H 0.17 1.79 6.76 -52.48 -0.35 1.44 16 24 H 0.40 5.19 7.44 -40.82 -0.30 4.89 16 25 H 0.07 0.96 7.95 -51.93 -0.41 0.54 16 26 H 0.07 0.96 7.97 -51.93 -0.41 0.54 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -29.89 281.48 -6.26 -36.15 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.56 Total: -0.78 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.97 Total: -10.78 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 1.05 Total: -44.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.89 -6.26 -36.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.833 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds