Wall clock time and date at job start Sun Mar 29 2020 22:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48494 * 109.47274 * 274.98587 * 3 2 1 5 5 H 1.48494 * 109.47179 * 34.98897 * 3 2 1 6 6 H 1.48508 * 109.46982 * 154.98851 * 3 2 1 7 7 C 1.38815 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00264 * 186.82251 * 7 2 1 9 9 N 1.36937 * 119.99898 * 6.82283 * 7 2 1 10 10 C 1.47425 * 125.64880 * 173.89922 * 9 7 2 11 11 C 1.54914 * 104.83128 * 155.90432 * 10 9 7 12 12 C 1.55156 * 101.58326 * 37.00799 * 11 10 9 13 13 H 1.09003 * 110.72457 * 82.85985 * 12 11 10 14 14 C 1.53001 * 110.72067 * 205.95616 * 12 11 10 15 15 C 1.50692 * 109.47093 * 182.55744 * 14 12 11 16 16 C 1.38243 * 120.00109 * 269.72445 * 15 14 12 17 17 C 1.38234 * 119.99790 * 179.79236 * 16 15 14 18 18 C 1.38237 * 119.99950 * 0.44145 * 17 16 15 19 19 C 1.38235 * 120.00235 * 359.81378 * 18 17 16 20 20 C 1.38232 * 119.99728 * 359.97438 * 19 18 17 21 21 C 1.47023 * 125.64857 * 353.93133 * 9 7 2 22 22 H 0.97004 * 120.00263 * 359.97438 * 1 2 3 23 23 H 1.08988 * 110.36903 * 37.06284 * 10 9 7 24 24 H 1.09000 * 110.36085 * 274.74043 * 10 9 7 25 25 H 1.08992 * 111.00321 * 278.93008 * 11 10 9 26 26 H 1.08996 * 110.99814 * 155.07994 * 11 10 9 27 27 H 1.09000 * 109.47111 * 302.56013 * 14 12 11 28 28 H 1.09001 * 109.46597 * 62.55793 * 14 12 11 29 29 H 1.07999 * 119.99485 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.99590 * 180.27504 * 17 16 15 31 31 H 1.08003 * 119.99333 * 179.83781 * 18 17 16 32 32 H 1.07999 * 120.00053 * 180.02562 * 19 18 17 33 33 H 1.07995 * 119.99885 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.88102 * 61.60797 * 21 9 7 35 35 H 1.09006 * 109.88533 * 300.44526 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0845 -1.2055 0.1106 9 7 1.3329 -2.3838 -0.1420 10 6 1.9489 -3.7153 -0.2866 11 6 0.8663 -4.7086 0.2044 12 6 -0.4312 -4.0409 -0.3228 13 1 -0.6010 -4.2996 -1.3679 14 6 -1.6334 -4.4422 0.5343 15 6 -2.8855 -3.8299 -0.0384 16 6 -3.3005 -2.5812 0.3853 17 6 -4.4468 -2.0177 -0.1433 18 6 -5.1830 -2.7068 -1.0889 19 6 -4.7709 -3.9577 -1.5087 20 6 -3.6223 -4.5193 -0.9833 21 6 -0.1292 -2.5347 -0.1753 22 1 -0.4851 0.8401 0.0004 23 1 2.8416 -3.7898 0.3342 24 1 2.1949 -3.9080 -1.3309 25 1 0.8589 -4.7719 1.2925 26 1 1.0081 -5.6929 -0.2417 27 1 -1.7295 -5.5280 0.5397 28 1 -1.4879 -4.0853 1.5539 29 1 -2.7271 -2.0443 1.1265 30 1 -4.7685 -1.0402 0.1844 31 1 -6.0800 -2.2675 -1.4999 32 1 -5.3459 -4.4958 -2.2477 33 1 -3.3001 -5.4964 -1.3115 34 1 -0.5388 -1.9895 -1.0257 35 1 -0.5620 -2.1588 0.7518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124083684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:41 Heat of formation + Delta-G solvation = 37.822643 kcal Electronic energy + Delta-G solvation = -16009.934946 eV Core-core repulsion = 13586.858721 eV Total energy + Delta-G solvation = -2423.076226 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.05652 -37.27478 -33.41828 -31.85229 -30.48939 -29.31431 -27.66710 -25.64760 -23.78208 -22.18933 -20.93437 -20.09653 -19.13826 -16.78321 -16.33078 -15.37574 -14.75887 -14.54006 -14.18195 -13.81725 -13.04842 -12.89102 -12.48252 -12.33890 -12.25032 -11.67021 -11.50343 -11.38861 -10.95997 -10.80269 -10.73336 -10.51539 -10.08986 -9.96002 -9.74989 -9.71195 -9.47948 -8.52080 -8.50516 -8.22109 -6.73595 -5.65584 -2.97211 1.76059 1.81934 3.43354 3.48657 3.50301 4.19118 4.55716 5.14113 5.21089 5.35101 5.45950 5.49154 5.55687 5.57632 5.75800 5.80139 5.90840 6.00004 6.11492 6.22692 6.26521 6.35413 6.45174 6.56181 6.60935 6.70825 6.80608 6.83749 6.93308 7.03982 7.14592 7.42884 7.63947 7.75130 7.91260 8.33777 9.29419 9.90116 10.58112 11.46108 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.008209 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.568294 B = 3409.950535 C = 4335.401590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.112 4.112 13 H 0.064 0.936 14 C -0.066 4.066 15 C -0.070 4.070 16 C -0.095 4.095 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.124 4.124 21 C 0.189 3.811 22 H 0.251 0.749 23 H 0.036 0.964 24 H 0.016 0.984 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -8.842 -0.285 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.006 3.994 11 C -0.166 4.166 12 C -0.132 4.132 13 H 0.082 0.918 14 C -0.103 4.103 15 C -0.070 4.070 16 C -0.113 4.113 17 C -0.135 4.135 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.142 4.142 21 C 0.064 3.936 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.060 0.940 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.634 -8.608 -0.262 11.508 hybrid contribution 0.441 1.014 -0.168 1.119 sum -7.193 -7.594 -0.430 10.468 Atomic orbital electron populations 1.69985 1.04764 1.24795 1.56865 1.24806 0.95716 0.97502 1.02393 0.86160 0.78709 0.83859 0.77442 1.21738 1.21839 1.20708 1.19064 0.91064 0.82698 1.42826 0.90585 1.44530 1.01834 1.01207 1.85957 1.21549 0.94630 0.86281 0.96916 1.22782 0.96166 0.97400 1.00275 1.22470 0.92663 0.99986 0.98044 0.91753 1.20574 0.91512 0.98954 0.99304 1.19942 0.95806 0.94832 0.96443 1.21225 0.95548 0.94523 0.99997 1.21128 0.95611 0.99492 0.97280 1.21034 1.00127 0.95418 0.98570 1.20995 0.97244 0.96026 1.00339 1.20965 0.95536 0.99947 0.97708 1.21171 0.84037 0.87674 1.00681 0.93907 0.94554 0.96635 0.91791 0.92437 0.91912 0.91038 0.85385 0.86462 0.86866 0.86840 0.86704 0.94022 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.36 55.49 0.58 -26.51 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.48 29.56 -169.99 -5.02 17.46 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.53 10.26 -15.06 -0.15 -6.69 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.61 -16.09 3.39 -170.07 -0.58 -16.67 16 10 C 0.13 2.85 7.23 -2.53 -0.02 2.84 16 11 C -0.13 -2.29 6.53 -24.58 -0.16 -2.45 16 12 C -0.11 -2.15 2.93 -88.79 -0.26 -2.41 16 13 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 14 C -0.07 -1.07 4.76 -27.89 -0.13 -1.21 16 15 C -0.07 -1.17 4.92 -104.63 -0.52 -1.69 16 16 C -0.09 -1.67 8.98 -39.58 -0.36 -2.03 16 17 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 18 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 19 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 20 C -0.12 -1.84 9.70 -39.58 -0.38 -2.23 16 21 C 0.19 4.65 4.18 -3.06 -0.01 4.64 16 22 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.04 0.76 8.14 -51.94 -0.42 0.33 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.07 1.20 7.95 -51.93 -0.41 0.78 16 29 H 0.13 2.42 7.39 -52.49 -0.39 2.03 16 30 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.04 1.17 7.37 -51.93 -0.38 0.79 16 35 H 0.04 1.16 6.28 -51.93 -0.33 0.83 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -30.76 285.83 -9.28 -40.04 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.28 Total: -0.35 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -3.28 Total: -18.28 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.00 Total: -43.18 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.76 -9.28 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124083684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.863 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds