Wall clock time and date at job start Sun Mar 29 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 119.99926 * 2 1 4 4 H 1.08002 * 120.00297 * 202.48392 * 3 2 1 5 5 C 1.38819 * 119.99965 * 22.49638 * 3 2 1 6 6 N 1.31613 * 119.99766 * 11.22742 * 5 3 2 7 7 Si 1.86796 * 120.00007 * 191.23482 * 5 3 2 8 8 H 1.48507 * 109.46852 * 59.99623 * 7 5 3 9 9 H 1.48496 * 109.47176 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47377 * 299.99654 * 7 5 3 11 11 C 1.46498 * 120.00314 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47272 * 270.00501 * 11 2 1 13 13 C 1.35101 * 126.41252 * 95.02806 * 12 11 2 14 14 N 1.33515 * 108.62879 * 179.97438 * 13 12 11 15 15 C 1.32556 * 109.15727 * 359.97438 * 14 13 12 16 16 C 1.40928 * 132.32819 * 179.97438 * 15 14 13 17 17 C 1.36023 * 119.33179 * 180.02562 * 16 15 14 18 18 C 1.40472 * 119.69259 * 0.02562 * 17 16 15 19 19 C 1.34958 * 120.29803 * 0.20930 * 18 17 16 20 20 N 1.36485 * 120.61044 * 359.57337 * 19 18 17 21 21 H 1.08996 * 109.47680 * 274.21014 * 1 2 3 22 22 H 1.08993 * 109.47282 * 34.21758 * 1 2 3 23 23 H 1.09011 * 109.46907 * 154.21410 * 1 2 3 24 24 H 0.97000 * 120.00405 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47211 * 149.99993 * 11 2 1 26 26 H 1.09003 * 109.47259 * 30.00366 * 11 2 1 27 27 H 1.08003 * 125.68483 * 359.93257 * 13 12 11 28 28 H 1.08009 * 120.33667 * 0.02578 * 16 15 14 29 29 H 1.07999 * 120.15452 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.85223 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.69483 * 179.71386 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1681 1.2215 -0.3577 5 6 1.5347 2.3424 0.4600 6 7 0.3854 2.2678 1.0970 7 14 2.3384 4.0043 0.1747 8 1 2.4925 4.2357 -1.2841 9 1 1.4872 5.0723 0.7577 10 1 3.6741 4.0261 0.8232 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 1.6892 -2.5537 2.1462 14 7 2.2363 -2.6884 3.3566 15 6 3.3306 -1.9433 3.4248 16 6 4.2668 -1.7243 4.4550 17 6 5.3157 -0.8866 4.2352 18 6 5.4508 -0.2530 2.9888 19 6 4.5435 -0.4690 2.0133 20 7 3.4888 -1.3104 2.2191 21 1 -0.3634 0.0754 1.0248 22 1 -0.3633 0.8497 -0.5778 23 1 -0.3633 -0.9254 -0.4471 24 1 -0.0445 3.0758 1.4181 25 1 3.1499 -1.1385 -0.5133 26 1 1.6085 -2.0286 -0.5130 27 1 0.7892 -3.0427 1.8036 28 1 4.1527 -2.2165 5.4096 29 1 6.0408 -0.7088 5.0155 30 1 6.2824 0.4129 2.8116 31 1 4.6543 0.0269 1.0603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159098968.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:51 Heat of formation + Delta-G solvation = 114.523570 kcal Electronic energy + Delta-G solvation = -16018.111897 eV Core-core repulsion = 13494.821330 eV Total energy + Delta-G solvation = -2523.290567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11742 -36.87556 -35.62328 -33.06820 -31.52047 -29.68887 -28.75662 -26.11999 -25.42246 -23.14424 -22.05761 -21.35260 -20.18399 -16.82850 -16.69910 -16.26837 -15.46349 -15.33702 -14.76294 -14.15725 -13.60796 -13.43587 -13.13334 -12.92024 -12.02971 -11.87693 -11.42880 -11.29740 -11.12505 -10.95646 -10.79533 -10.55317 -10.34263 -10.14233 -10.03526 -9.45966 -8.66498 -8.23223 -7.18698 -6.87395 -5.84120 -3.31027 1.26961 1.84552 3.22316 3.29826 3.34847 3.36355 3.54367 4.07583 4.40034 4.76768 5.04901 5.22928 5.28362 5.37753 5.51783 5.57976 5.85336 5.96995 6.00752 6.14862 6.34617 6.41525 6.54228 6.70072 6.72984 7.10011 7.28663 7.31515 7.61519 7.71298 7.74148 8.26452 8.49107 9.09915 9.72124 10.21567 11.19662 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.010437 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.365385 B = 2682.243686 C = 3375.513248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.264 4.264 4 H 0.066 0.934 5 C 0.008 3.992 6 N -0.898 5.898 7 Si 0.904 3.096 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.214 3.786 12 C -0.040 4.040 13 C 0.011 3.989 14 N -0.499 5.499 15 C 0.199 3.801 16 C -0.087 4.087 17 C -0.108 4.108 18 C -0.172 4.172 19 C 0.095 3.905 20 N -0.348 5.348 21 H 0.029 0.971 22 H 0.047 0.953 23 H 0.001 0.999 24 H 0.255 0.745 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 -5.728 1.397 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.310 5.310 3 C -0.393 4.393 4 H 0.084 0.916 5 C -0.192 4.192 6 N -0.542 5.542 7 Si 0.733 3.267 8 H -0.208 1.208 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.085 3.915 12 C -0.157 4.157 13 C -0.139 4.139 14 N -0.219 5.219 15 C -0.044 4.044 16 C -0.108 4.108 17 C -0.132 4.132 18 C -0.193 4.193 19 C -0.028 4.028 20 N -0.021 5.021 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.019 0.981 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.187 0.813 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.452 -6.048 1.986 9.801 hybrid contribution 0.548 1.696 -0.467 1.843 sum 8.000 -4.352 1.519 9.233 Atomic orbital electron populations 1.20840 0.81942 0.95867 0.99521 1.44171 1.02223 1.00170 1.84409 1.19083 0.98323 0.85265 1.36655 0.91594 1.25091 0.97578 0.98671 0.97817 1.70060 1.17551 1.27483 1.39067 0.86357 0.78629 0.83699 0.77999 1.20816 1.21468 1.20821 1.19502 0.96578 0.89128 0.86301 1.23255 0.90421 1.02289 0.99702 1.22084 1.00781 1.00986 0.90078 1.70577 1.06971 1.23487 1.20896 1.20827 0.97837 0.98210 0.87538 1.20082 0.92952 1.00463 0.97267 1.20857 0.98049 0.97034 0.97237 1.20625 1.01006 1.04154 0.93542 1.21642 0.86642 0.92874 1.01658 1.42670 1.17536 1.29184 1.12721 0.95246 0.93398 0.98068 0.93452 0.93070 0.91212 0.81298 0.84212 0.84955 0.84042 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 9.01 59.84 0.54 4.50 16 2 N -0.59 -14.38 2.91 -182.50 -0.53 -14.91 16 3 C -0.26 -6.91 9.67 -15.06 -0.15 -7.06 16 4 H 0.07 1.65 7.76 -52.49 -0.41 1.24 16 5 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 6 N -0.90 -26.03 10.59 55.49 0.59 -25.45 16 7 Si 0.90 21.27 29.57 -169.99 -5.03 16.24 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 C 0.21 4.32 6.14 -5.19 -0.03 4.28 16 12 C -0.04 -0.83 6.61 -81.48 -0.54 -1.37 16 13 C 0.01 0.23 11.75 -17.94 -0.21 0.02 16 14 N -0.50 -10.73 11.32 -12.78 -0.14 -10.87 16 15 C 0.20 4.04 7.81 -156.04 -1.22 2.82 16 16 C -0.09 -1.42 10.11 -39.36 -0.40 -1.82 16 17 C -0.11 -1.50 10.07 -39.54 -0.40 -1.90 16 18 C -0.17 -2.53 9.99 -39.91 -0.40 -2.93 16 19 C 0.09 1.69 10.85 -16.65 -0.18 1.51 16 20 N -0.35 -7.11 2.95 -58.46 -0.17 -7.28 16 21 H 0.03 0.79 7.41 -51.93 -0.39 0.41 16 22 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 23 H 0.00 0.02 7.85 -51.92 -0.41 -0.39 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 25 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 26 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 27 H 0.17 3.00 8.06 -52.48 -0.42 2.58 16 28 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.16 2.73 7.97 -52.49 -0.42 2.31 16 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -31.91 270.39 -7.93 -39.83 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.64 Total: 0.16 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.07 Total: -1.81 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.26 Total: -58.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.91 -7.93 -39.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159098968.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.357 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds