Wall clock time and date at job start Sun Mar 29 2020 21:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35910 * 117.00276 * 2 1 4 4 C 1.38487 * 119.97813 * 0.02562 * 3 2 1 5 5 C 1.39536 * 119.78274 * 179.97438 * 4 3 2 6 6 C 1.43199 * 120.11869 * 180.02562 * 5 4 3 7 7 N 5.84227 * 81.27343 * 0.02562 * 2 1 3 8 8 C 1.39666 * 119.75565 * 0.02562 * 5 4 3 9 9 C 1.37953 * 119.95801 * 359.97438 * 8 5 4 10 10 C 1.38296 * 120.20956 * 359.73007 * 9 8 5 11 11 C 1.50702 * 119.87016 * 180.27299 * 10 9 8 12 12 C 1.52996 * 109.47199 * 265.27456 * 11 10 9 13 13 C 1.50704 * 109.47561 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99372 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00107 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99658 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47019 * 60.00068 * 17 15 13 19 19 H 1.48506 * 109.47050 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47385 * 300.00122 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99701 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99822 * 1 2 3 24 24 H 1.07997 * 120.10697 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.01903 * 180.02562 * 8 5 4 26 26 H 1.07995 * 119.89411 * 180.02562 * 9 8 5 27 27 H 1.09002 * 109.47358 * 25.27212 * 11 10 9 28 28 H 1.08999 * 109.46811 * 145.27400 * 11 10 9 29 29 H 1.09004 * 109.47479 * 300.00293 * 12 11 10 30 30 H 1.08999 * 109.47285 * 60.00235 * 12 11 10 31 31 H 0.97003 * 119.99966 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3721 0.0005 5 6 1.9292 3.6132 0.0011 6 6 1.1560 4.8185 0.0022 7 7 0.5426 5.7746 0.0026 8 6 3.3245 3.6755 0.0005 9 6 4.0660 2.5123 0.0000 10 6 3.4323 1.2831 0.0056 11 6 4.2499 0.0171 0.0112 12 6 4.4266 -0.4823 -1.4241 13 6 5.2436 -1.7486 -1.4186 14 1 5.6015 -2.1561 -0.4846 15 6 5.5352 -2.3861 -2.6058 16 7 5.0998 -1.8895 -3.7430 17 14 6.5485 -3.9553 -2.5988 18 1 5.8502 -4.9920 -1.7969 19 1 6.7199 -4.4401 -3.9920 20 1 7.8805 -3.6818 -2.0019 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 0.2129 2.3173 0.0005 25 1 3.8226 4.6339 0.0014 26 1 5.1449 2.5616 0.0000 27 1 5.2278 0.2180 0.4489 28 1 3.7375 -0.7436 0.6002 29 1 3.4487 -0.6832 -1.8619 30 1 4.9389 0.2785 -2.0130 31 1 5.3046 -2.3383 -4.5782 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204784562.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:41 Heat of formation + Delta-G solvation = 1.243776 kcal Electronic energy + Delta-G solvation = -15040.209936 eV Core-core repulsion = 12479.714437 eV Total energy + Delta-G solvation = -2560.495499 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17283 -37.64796 -36.32161 -34.11917 -32.25215 -30.20217 -29.29859 -27.26101 -25.51638 -22.72673 -22.12942 -20.40522 -19.29252 -16.65924 -16.40161 -15.91725 -15.54301 -15.15493 -14.45111 -14.05390 -13.89259 -13.74977 -13.12385 -12.89759 -12.59899 -12.38304 -12.13922 -11.86692 -11.45381 -11.27811 -10.94997 -10.88172 -10.77839 -10.55496 -9.81188 -9.65510 -9.10566 -8.65792 -8.32632 -7.90881 -5.97999 -4.00579 0.88883 1.50750 2.63955 3.03162 3.34538 3.39124 3.41394 3.47093 3.89739 3.97939 4.47480 4.85305 5.05347 5.10748 5.23312 5.27295 5.37932 5.50249 5.58455 5.75278 5.87133 6.10279 6.28677 6.42355 6.62458 6.72417 6.85016 7.08101 7.45611 7.56029 7.69640 7.84754 8.02086 8.42287 9.05936 9.63064 11.13074 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.005690 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.996555 B = 4919.339356 C = 5284.857637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.127 3.873 4 C -0.163 4.163 5 C -0.019 4.019 6 C 0.266 3.734 7 N -0.435 5.435 8 C -0.101 4.101 9 C -0.089 4.089 10 C -0.053 4.053 11 C -0.077 4.077 12 C 0.032 3.968 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.100 0.900 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 6.420 7.959 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.081 3.919 4 C -0.184 4.184 5 C -0.023 4.023 6 C -0.048 4.048 7 N -0.110 5.110 8 C -0.122 4.122 9 C -0.107 4.107 10 C -0.054 4.054 11 C -0.114 4.114 12 C -0.005 4.005 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.119 0.881 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.158 0.842 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.091 7.672 7.764 13.017 hybrid contribution 0.446 -1.076 -0.212 1.184 sum -6.645 6.596 7.552 12.029 Atomic orbital electron populations 1.23074 0.79031 1.04094 1.00851 1.86267 1.20618 1.25732 1.88220 1.18665 0.91913 0.83992 0.97330 1.21090 0.99933 0.90769 1.06649 1.15591 0.91782 0.86489 1.08440 1.25783 0.93058 0.92872 0.93115 1.81210 1.09067 1.10926 1.09825 1.21011 0.91279 0.99202 1.00704 1.20899 1.00527 0.90262 0.99026 1.20105 0.90829 0.97581 0.96912 1.20808 0.96929 0.91424 1.02277 1.19049 0.97332 0.95617 0.88483 1.21197 1.33086 1.08865 0.92701 0.92646 1.24997 0.96103 0.97561 0.95646 1.69957 1.45919 1.39898 0.97635 0.86676 0.80760 0.83732 0.76920 1.20254 1.21356 1.20243 0.88128 0.92746 0.93034 0.85023 0.85265 0.84207 0.91887 0.91330 0.96057 0.96553 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.75 9.61 -19.46 -0.19 -4.94 16 3 C 0.13 1.99 6.65 -39.28 -0.26 1.72 16 4 C -0.16 -2.16 8.74 -39.01 -0.34 -2.50 16 5 C -0.02 -0.25 5.73 -106.95 -0.61 -0.87 16 6 C 0.27 3.59 15.33 -22.47 -0.34 3.25 16 7 N -0.43 -6.55 18.54 41.84 0.78 -5.77 16 8 C -0.10 -1.25 9.75 -39.15 -0.38 -1.63 16 9 C -0.09 -1.24 9.65 -39.66 -0.38 -1.62 16 10 C -0.05 -0.88 5.15 -104.39 -0.54 -1.42 16 11 C -0.08 -1.51 4.99 -27.88 -0.14 -1.65 16 12 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 13 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 14 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 23 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 24 H 0.13 1.45 6.29 -52.49 -0.33 1.12 16 25 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.07 1.36 7.68 -51.93 -0.40 0.96 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 281.56 15.07 4.24 4.24 Total: -1.00 -30.98 281.56 -5.61 -36.59 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -3.60 Total: -4.66 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.56 Total: -15.89 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 1.51 Total: -31.58 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.19 Total: -4.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.98 -5.61 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204784562.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.830 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds