Wall clock time and date at job start Sun Mar 29 2020 21:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39964 * 120.61189 * 101.43924 * 3 2 1 5 5 C 1.38380 * 118.36098 * 180.28618 * 4 3 2 6 6 C 1.38330 * 119.51043 * 359.72876 * 5 4 3 7 7 N 1.31889 * 121.21700 * 359.97438 * 6 5 4 8 8 C 1.32380 * 121.78038 * 0.02562 * 7 6 5 9 9 N 1.38408 * 119.82304 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99924 * 0.02562 * 9 8 7 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47116 * 59.99479 * 17 15 13 19 19 H 1.48490 * 109.47381 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46756 * 300.00079 * 17 15 13 21 21 H 1.07993 * 120.81760 * 359.97438 * 4 3 2 22 22 H 1.08000 * 120.24549 * 179.75692 * 5 4 3 23 23 H 1.07993 * 119.39022 * 180.02562 * 6 5 4 24 24 H 0.97000 * 119.99655 * 179.97438 * 9 8 7 25 25 H 1.09002 * 109.47391 * 59.99506 * 10 9 8 26 26 H 1.09001 * 109.46813 * 299.99562 * 10 9 8 27 27 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2806 0.2399 -1.1807 5 6 4.6634 0.2237 -1.1286 6 6 5.2971 -0.0200 0.0766 7 7 4.6076 -0.2373 1.1797 8 6 3.2838 -0.2333 1.1867 9 7 2.6010 -0.4667 2.3678 10 6 3.3432 -0.7169 3.6058 11 6 2.3579 -0.9422 4.7545 12 6 3.1331 -1.2028 6.0476 13 6 2.1627 -1.4240 7.1791 14 1 1.0993 -1.3824 6.9945 15 6 2.6322 -1.6796 8.4500 16 7 3.9270 -1.7307 8.6747 17 14 1.4293 -1.9545 9.8525 18 1 0.5700 -3.1260 9.5451 19 1 2.1816 -2.2073 11.1075 20 1 0.5799 -0.7479 10.0197 21 1 2.7641 0.4273 -2.1103 22 1 5.2435 0.4006 -2.0222 23 1 6.3762 -0.0317 0.1151 24 1 1.6311 -0.4640 2.3759 25 1 3.9737 0.1431 3.8317 26 1 3.9670 -1.6024 3.4828 27 1 1.7345 -0.0565 4.8773 28 1 1.7272 -1.8019 4.5289 29 1 3.7568 -2.0883 5.9251 30 1 3.7636 -0.3427 6.2730 31 1 4.2573 -1.9109 9.5688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264221638.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:20 Heat of formation + Delta-G solvation = 31.632145 kcal Electronic energy + Delta-G solvation = -14552.155190 eV Core-core repulsion = 12025.270180 eV Total energy + Delta-G solvation = -2526.885009 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32112 -37.75402 -37.59824 -35.54440 -33.52102 -33.46213 -30.88737 -28.19421 -25.65372 -25.05944 -23.09483 -22.21373 -19.97533 -18.58280 -18.55108 -17.56863 -16.52612 -16.51815 -15.98255 -15.49004 -15.32109 -14.75865 -14.32655 -14.27108 -14.04498 -13.93259 -13.67379 -13.58145 -12.93645 -12.78168 -12.57364 -12.39118 -11.85236 -11.51630 -11.22639 -11.16180 -10.74550 -10.55938 -10.42655 -8.77855 -8.21095 -6.32237 -0.18772 0.54096 1.39787 1.42303 1.50373 1.55336 1.99381 2.10433 2.40859 2.87856 3.02124 3.12320 3.59597 3.94674 4.14214 4.20088 4.21896 4.39949 4.55540 4.67813 4.95694 5.01555 5.05857 5.12769 5.26589 5.47397 5.62655 5.69329 5.82273 6.01020 6.21167 6.25227 6.42874 6.83707 7.19426 7.36923 8.90528 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.041028 B = 0.004450 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.303446 B = 6290.896650 C = 6947.446399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.281 3.719 3 C -0.179 4.179 4 C 0.025 3.975 5 C -0.225 4.225 6 C 0.179 3.821 7 N -0.569 5.569 8 C 0.434 3.566 9 N -0.715 5.715 10 C 0.147 3.853 11 C -0.109 4.109 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 H 0.170 0.830 22 H 0.181 0.819 23 H 0.192 0.808 24 H 0.407 0.593 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H -0.002 1.002 30 H -0.002 1.002 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 4.203 -21.032 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.033 4.033 3 C -0.191 4.191 4 C -0.002 4.002 5 C -0.247 4.247 6 C 0.019 3.981 7 N -0.288 5.288 8 C 0.194 3.806 9 N -0.344 5.344 10 C 0.023 3.977 11 C -0.147 4.147 12 C -0.008 4.008 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.187 0.813 22 H 0.199 0.801 23 H 0.209 0.791 24 H 0.243 0.757 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.137 3.973 -19.897 20.402 hybrid contribution -0.852 -0.087 0.477 0.981 sum 1.285 3.885 -19.420 19.847 Atomic orbital electron populations 1.81292 1.12935 1.12158 1.08146 1.25627 0.92498 0.92094 0.93064 1.16376 0.84322 1.22310 0.96095 1.21778 0.94652 0.88056 0.95758 1.22167 0.94017 1.07757 1.00766 1.23425 1.01598 0.86595 0.86508 1.67444 1.05167 1.22900 1.33250 1.18467 0.88959 0.88181 0.84985 1.44823 1.08654 1.74772 1.06136 1.21203 0.94035 1.00716 0.81748 1.21650 0.97960 1.00871 0.94268 1.18882 0.94956 0.95311 0.91684 1.21638 0.93671 1.48760 0.94470 0.92337 1.25941 0.96966 0.94923 1.01754 1.70082 1.14198 1.50154 1.22574 0.85526 0.78721 0.79041 0.77909 1.19308 1.20659 1.19316 0.81258 0.80140 0.79129 0.75657 0.92193 0.92188 0.92500 0.92500 0.98401 0.98403 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.75 18.54 19.00 0.35 -13.40 16 2 C 0.28 7.02 14.12 88.33 1.25 8.27 16 3 C -0.18 -3.81 5.77 -21.05 -0.12 -3.93 16 4 C 0.03 0.33 9.90 22.72 0.23 0.56 16 5 C -0.22 -2.26 10.09 22.33 0.23 -2.03 16 6 C 0.18 2.70 11.16 84.71 0.95 3.65 16 7 N -0.57 -14.14 9.55 -192.42 -1.84 -15.98 16 8 C 0.43 11.32 7.49 133.62 1.00 12.32 16 9 N -0.71 -21.21 5.62 -344.35 -1.93 -23.15 16 10 C 0.15 5.08 5.68 86.38 0.49 5.57 16 11 C -0.11 -4.45 5.27 30.59 0.16 -4.28 16 12 C 0.03 1.54 4.97 29.85 0.15 1.69 16 13 C -0.55 -31.26 9.11 25.60 0.23 -31.02 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 17 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 22 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 23 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 24 H 0.41 11.73 7.31 -92.71 -0.68 11.05 16 25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -69.54 283.26 4.37 -65.17 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.46 Total: 5.74 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.02 Total: -8.61 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -3.13 Total: -108.75 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.54 4.37 -65.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264221638.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.802 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds