Wall clock time and date at job start Sun Mar 29 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38333 * 119.39107 * 2 1 4 4 C 1.38377 * 119.50458 * 179.75199 * 3 2 1 5 5 C 1.39958 * 118.36597 * 0.50984 * 4 3 2 6 6 C 1.43200 * 120.61335 * 179.77831 * 5 4 3 7 7 N 4.80310 * 135.14018 * 0.02562 * 3 1 2 8 8 C 1.40549 * 118.77532 * 359.75661 * 5 4 3 9 9 N 1.38404 * 119.82446 * 179.97438 * 8 5 4 10 10 C 1.46499 * 120.00418 * 179.97438 * 9 8 5 11 11 C 1.52999 * 109.47551 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47228 * 180.02562 * 11 10 9 13 13 H 1.07993 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99852 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00215 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99875 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46868 * 90.00487 * 16 14 12 18 18 H 1.48501 * 109.47130 * 210.00008 * 16 14 12 19 19 H 1.48495 * 109.47223 * 330.00054 * 16 14 12 20 20 N 1.31887 * 119.38840 * 180.27421 * 2 1 3 21 21 H 1.09002 * 109.47152 * 269.72620 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72721 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72702 * 1 2 3 24 24 H 1.08003 * 120.24483 * 0.02562 * 3 2 1 25 25 H 1.08006 * 120.81504 * 180.27156 * 4 3 2 26 26 H 0.97006 * 120.00063 * 359.97438 * 9 8 5 27 27 H 1.08996 * 109.47691 * 300.00384 * 10 9 8 28 28 H 1.09011 * 109.46680 * 60.00132 * 10 9 8 29 29 H 1.09004 * 109.47134 * 300.00228 * 11 10 9 30 30 H 1.08999 * 109.46867 * 60.00048 * 11 10 9 31 31 H 0.97004 * 120.00339 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1859 1.2053 0.0000 4 6 3.5697 1.2080 0.0052 5 6 4.2371 -0.0222 -0.0006 6 6 5.6681 -0.0754 -0.0004 7 7 6.8032 -0.1177 -0.0015 8 6 3.4769 -1.2043 -0.0062 9 7 4.1145 -2.4327 -0.0126 10 6 3.3260 -3.6674 -0.0179 11 6 4.2671 -4.8736 -0.0250 12 6 3.4559 -6.1437 -0.0311 13 1 2.3771 -6.0953 -0.0296 14 6 4.0912 -7.3673 -0.0376 15 7 5.4050 -7.4262 -0.0379 16 14 3.0856 -8.9416 -0.0444 17 1 2.8182 -9.3520 -1.4463 18 1 3.8416 -10.0149 0.6498 19 1 1.7979 -8.7096 0.6577 20 7 2.1542 -1.1491 -0.0055 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8925 -0.5096 24 1 1.6400 2.1372 0.0004 25 1 4.1211 2.1367 0.0097 26 1 5.0836 -2.4762 -0.0135 27 1 2.6980 -3.7013 0.8723 28 1 2.6967 -3.6927 -0.9077 29 1 4.8948 -4.8395 -0.9156 30 1 4.8967 -4.8485 0.8644 31 1 5.8519 -8.2872 -0.0428 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273295358.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:37 Heat of formation + Delta-G solvation = 50.257242 kcal Electronic energy + Delta-G solvation = -14791.938520 eV Core-core repulsion = 12265.861155 eV Total energy + Delta-G solvation = -2526.077364 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36939 -36.62382 -36.04678 -33.36238 -32.84869 -31.43451 -29.33732 -27.73998 -24.79251 -22.95004 -22.39852 -20.93079 -18.89641 -17.19434 -16.66336 -16.04965 -15.05699 -14.79506 -14.44802 -13.95351 -13.79957 -13.52991 -13.49171 -12.96499 -12.74071 -12.36808 -12.31099 -12.25018 -11.91666 -11.24379 -11.13632 -10.68076 -10.63395 -9.87889 -9.64940 -9.47686 -9.44611 -9.26233 -8.45540 -7.52773 -6.10256 -4.14011 0.78875 1.50040 2.75267 3.09133 3.28404 3.33801 3.36595 3.43516 3.99596 4.00687 4.38358 4.49518 4.67787 5.07731 5.22023 5.26625 5.39156 5.52287 5.56282 5.89047 5.95495 6.06544 6.21450 6.30999 6.52143 6.71132 7.25030 7.46462 7.57817 7.58297 7.65305 7.87870 8.20639 8.35747 8.91864 9.50963 11.01404 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.028651 B = 0.005645 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.054826 B = 4958.774301 C = 5910.079111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.213 3.787 3 C -0.254 4.254 4 C 0.023 3.977 5 C -0.180 4.180 6 C 0.264 3.736 7 N -0.431 5.431 8 C 0.459 3.541 9 N -0.698 5.698 10 C 0.129 3.871 11 C 0.009 3.991 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 N -0.537 5.537 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.407 0.593 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 16.817 0.105 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 C -0.278 4.278 4 C -0.005 4.005 5 C -0.193 4.193 6 C -0.050 4.050 7 N -0.107 5.107 8 C 0.217 3.783 9 N -0.324 5.324 10 C 0.007 3.993 11 C -0.029 4.029 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.256 5.256 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.154 0.846 25 H 0.155 0.845 26 H 0.244 0.756 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.224 15.568 0.102 17.163 hybrid contribution 0.087 -0.170 0.002 0.191 sum -7.137 15.398 0.104 16.972 Atomic orbital electron populations 1.20820 0.88691 1.03737 1.03428 1.21237 0.96732 0.87478 0.87540 1.21439 0.93922 0.99077 1.13329 1.21261 0.94206 0.95692 0.89335 1.16222 0.85080 0.94506 1.23447 1.25394 0.92302 0.94229 0.93120 1.81261 1.11833 1.06711 1.10941 1.18333 0.88117 0.85276 0.86616 1.45336 1.09367 1.03407 1.74251 1.21809 0.94816 0.81555 1.01129 1.19359 0.94809 0.90823 0.97880 1.20995 0.93159 0.90222 1.51594 0.92120 1.25013 0.94941 0.99410 0.94957 1.69964 1.07638 1.25455 1.50134 0.86497 0.80111 0.82648 0.78201 1.20544 1.21178 1.19683 1.67250 1.06567 1.29294 1.22447 0.89899 0.90040 0.90421 0.84573 0.84488 0.75638 0.92106 0.92115 0.96031 0.96021 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.16 36.01 0.37 -0.54 16 2 C 0.21 2.48 6.78 -82.53 -0.56 1.92 16 3 C -0.25 -2.44 9.70 -39.50 -0.38 -2.82 16 4 C 0.02 0.24 9.90 -38.89 -0.39 -0.15 16 5 C -0.18 -2.49 5.77 -106.46 -0.61 -3.10 16 6 C 0.26 4.01 14.12 -22.48 -0.32 3.69 16 7 N -0.43 -7.33 18.54 41.83 0.78 -6.55 16 8 C 0.46 7.36 7.49 -155.08 -1.16 6.20 16 9 N -0.70 -12.61 5.62 -60.19 -0.34 -12.94 16 10 C 0.13 2.66 5.62 -4.04 -0.02 2.63 16 11 C 0.01 0.22 5.09 -27.88 -0.14 0.08 16 12 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 N -0.54 -8.25 9.45 -8.41 -0.08 -8.33 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 24 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 25 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 26 H 0.41 7.32 7.31 -40.82 -0.30 7.02 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 283.35 15.07 4.27 4.27 Total: -1.00 -30.85 283.35 -6.93 -37.77 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.64 Total: 0.45 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.63 Total: -5.20 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 1.09 Total: -53.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.85 -6.93 -37.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273295358.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.031 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds