Wall clock time and date at job start Sun Mar 29 2020 22:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47247 * 2 1 4 4 H 1.08997 * 109.47174 * 54.00893 * 3 2 1 5 5 C 1.50704 * 109.47455 * 174.00629 * 3 2 1 6 6 H 1.07999 * 120.00240 * 115.34883 * 5 3 2 7 7 C 1.37878 * 119.99872 * 295.35626 * 5 3 2 8 8 N 1.31515 * 120.00277 * 352.92823 * 7 5 3 9 9 Si 1.86799 * 120.00142 * 172.92577 * 7 5 3 10 10 H 1.48504 * 109.47102 * 270.00477 * 9 7 5 11 11 H 1.48505 * 109.46812 * 29.99904 * 9 7 5 12 12 H 1.48501 * 109.47297 * 149.99911 * 9 7 5 13 13 N 1.46497 * 109.47308 * 294.00569 * 3 2 1 14 14 C 1.38978 * 120.00116 * 94.03319 * 13 3 2 15 15 C 1.39427 * 119.63058 * 5.68877 * 14 13 3 16 16 C 1.38318 * 119.31732 * 179.79378 * 15 14 13 17 17 C 1.38736 * 118.60214 * 0.47353 * 16 15 14 18 18 C 1.39256 * 119.21873 * 359.74914 * 17 16 15 19 19 C 1.43202 * 119.69467 * 179.97438 * 18 17 16 20 20 N 7.68663 * 65.33090 * 314.95846 * 2 1 3 21 21 N 1.32115 * 119.63711 * 185.96335 * 14 13 3 22 22 H 1.08999 * 109.47191 * 305.17784 * 1 2 3 23 23 H 1.09003 * 109.46664 * 65.17376 * 1 2 3 24 24 H 1.08997 * 109.47339 * 185.16917 * 1 2 3 25 25 H 1.09002 * 109.47289 * 240.00085 * 2 1 3 26 26 H 1.09005 * 109.46826 * 120.00321 * 2 1 3 27 27 H 0.97004 * 119.99499 * 355.97202 * 8 7 5 28 28 H 0.97000 * 120.00583 * 274.03117 * 13 3 2 29 29 H 1.08004 * 120.33590 * 0.02562 * 15 14 13 30 30 H 1.07997 * 120.69789 * 180.20673 * 16 15 14 31 31 H 1.07996 * 120.39536 * 179.76842 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5918 1.9863 0.8315 5 6 3.5397 1.4451 0.1484 6 1 4.1610 1.8168 -0.6530 7 6 4.1186 0.9728 1.3072 8 7 3.3643 0.6505 2.3351 9 14 5.9745 0.7907 1.4171 10 1 6.3664 -0.5675 0.9622 11 1 6.6238 1.8088 0.5527 12 1 6.4086 0.9861 2.8238 13 7 1.6730 2.0902 -1.2617 14 6 0.5024 2.8344 -1.3460 15 6 -0.2557 3.0593 -0.1976 16 6 -1.4174 3.8046 -0.2882 17 6 -1.7954 4.2973 -1.5288 18 6 -0.9958 4.0326 -2.6377 19 6 -1.3766 4.5358 -3.9232 20 7 -1.6782 4.9356 -4.9428 21 7 0.1173 3.3164 -2.5143 22 1 -0.3633 0.5920 0.8400 23 1 -0.3633 0.4315 -0.9327 24 1 -0.3634 -1.0234 0.0926 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.4065 0.7997 2.2995 28 1 2.2471 1.9997 -2.0384 29 1 0.0630 2.6588 0.7535 30 1 -2.0198 3.9952 0.5877 31 1 -2.6990 4.8795 -1.6333 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273903638.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:57 Heat of formation + Delta-G solvation = 61.701205 kcal Electronic energy + Delta-G solvation = -15400.590586 eV Core-core repulsion = 12875.009469 eV Total energy + Delta-G solvation = -2525.581117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12078 -37.05664 -36.10553 -33.27449 -32.33390 -31.28775 -29.58535 -26.33942 -24.64766 -23.31732 -22.32743 -20.48224 -18.70366 -17.78157 -16.47114 -16.04659 -15.27293 -14.68595 -14.29363 -13.90353 -13.57861 -13.39476 -13.01440 -12.78707 -12.63541 -12.60779 -12.19160 -12.04053 -11.58358 -10.86991 -10.84643 -10.63238 -10.25767 -10.12934 -9.89099 -9.52441 -9.36389 -8.78598 -8.53685 -7.15833 -6.60128 -4.35758 0.89994 1.67513 2.57573 3.06513 3.33573 3.35508 3.51254 3.56461 4.07376 4.22212 4.37831 4.97322 5.11041 5.25585 5.34861 5.54165 5.66119 5.88445 5.90818 6.07743 6.14876 6.35594 6.51675 6.57814 6.65106 6.77549 6.96493 7.25227 7.41413 7.54389 7.63614 8.11176 8.30746 8.54569 8.59041 9.34006 10.76370 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.037932 B = 0.006278 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.994132 B = 4458.684784 C = 4741.678061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.262 3.738 4 H 0.041 0.959 5 C -0.614 4.614 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.901 5.901 9 Si 1.071 2.929 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.283 1.283 13 N -0.688 5.688 14 C 0.424 3.576 15 C -0.210 4.210 16 C -0.038 4.038 17 C -0.201 4.201 18 C 0.230 3.770 19 C 0.280 3.720 20 N -0.412 5.412 21 N -0.534 5.534 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.272 0.728 28 H 0.400 0.600 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 2.885 -1.774 8.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.159 3.841 4 H 0.059 0.941 5 C -0.652 4.652 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.536 5.536 9 Si 0.899 3.101 10 H -0.212 1.212 11 H -0.214 1.214 12 H -0.209 1.209 13 N -0.313 5.313 14 C 0.182 3.818 15 C -0.236 4.236 16 C -0.063 4.063 17 C -0.229 4.229 18 C 0.092 3.908 19 C -0.037 4.037 20 N -0.089 5.089 21 N -0.255 5.255 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.234 0.766 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.126 2.686 -2.859 7.275 hybrid contribution -1.345 0.409 -0.248 1.427 sum -7.471 3.096 -3.107 8.663 Atomic orbital electron populations 1.21901 0.98170 1.00066 1.00542 1.22103 0.92998 1.00208 1.02331 1.19035 0.96071 0.88361 0.80648 0.94130 1.22069 0.90207 1.47898 1.05029 0.92356 1.25766 1.07113 0.92998 0.91633 1.70804 1.07767 1.43970 1.31099 0.83497 0.73835 0.76657 0.76110 1.21215 1.21390 1.20893 1.45275 1.19286 1.50892 1.15872 1.18385 0.87613 0.88075 0.87695 1.21908 0.97460 1.04650 0.99600 1.21199 0.94848 0.93267 0.96995 1.21453 1.02273 1.06773 0.92390 1.15892 0.92011 0.96295 0.86652 1.25245 0.93075 0.93292 0.92055 1.81182 1.08745 1.08938 1.10027 1.66988 1.16574 1.15559 1.26380 0.93347 0.93882 0.94178 0.93178 0.90343 0.91676 0.76553 0.83834 0.84413 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.53 37.16 0.32 -2.26 16 2 C -0.14 -2.81 5.30 -26.74 -0.14 -2.95 16 3 C 0.26 5.66 1.77 -69.09 -0.12 5.54 16 4 H 0.04 0.92 5.12 -51.93 -0.27 0.65 16 5 C -0.61 -15.23 8.69 -34.44 -0.30 -15.53 16 6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 7 C 0.03 0.78 5.19 -17.82 -0.09 0.69 16 8 N -0.90 -24.05 12.82 55.43 0.71 -23.34 16 9 Si 1.07 23.07 29.91 -169.99 -5.08 17.99 16 10 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.69 -13.38 4.99 -55.06 -0.27 -13.65 16 14 C 0.42 7.54 6.45 -155.18 -1.00 6.54 16 15 C -0.21 -3.28 7.77 -39.11 -0.30 -3.58 16 16 C -0.04 -0.47 10.15 -39.37 -0.40 -0.87 16 17 C -0.20 -2.49 9.79 -39.02 -0.38 -2.87 16 18 C 0.23 3.48 6.58 -85.08 -0.56 2.92 16 19 C 0.28 4.26 15.53 -22.47 -0.35 3.92 16 20 N -0.41 -6.69 18.54 41.84 0.78 -5.91 16 21 N -0.53 -9.33 10.31 -10.34 -0.11 -9.44 16 22 H 0.05 0.79 7.00 -51.93 -0.36 0.43 16 23 H 0.04 0.74 6.79 -51.93 -0.35 0.39 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.78 6.26 -51.93 -0.32 1.45 16 27 H 0.27 7.08 6.19 -40.82 -0.25 6.83 16 28 H 0.40 7.73 8.80 -40.82 -0.36 7.37 16 29 H 0.14 2.32 5.04 -52.48 -0.26 2.05 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 269.05 15.07 4.05 4.05 Total: -1.00 -26.65 269.05 -6.34 -32.99 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.08 Total: 5.78 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.33 Total: -8.47 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 1.10 Total: -52.35 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.08 Total: 17.99 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.65 -6.34 -32.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273903638.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.690 kcal (2) G-P(sol) polarization free energy of solvation -26.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds