Wall clock time and date at job start Sun Mar 29 2020 21:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38345 * 120.07897 * 2 1 4 4 C 1.37784 * 120.24608 * 180.24987 * 3 2 1 5 5 C 1.39786 * 120.26575 * 359.45890 * 4 3 2 6 6 C 1.38715 * 119.01158 * 0.54222 * 5 4 3 7 7 C 1.38122 * 120.47357 * 359.72812 * 6 5 4 8 8 C 1.51225 * 108.51601 * 179.75098 * 6 5 4 9 9 C 1.53747 * 104.51614 * 359.97438 * 8 6 5 10 10 N 1.39440 * 129.33794 * 180.23561 * 5 4 3 11 11 C 1.34770 * 124.93908 * 0.25084 * 10 5 4 12 12 O 1.21748 * 120.00096 * 0.02562 * 11 10 5 13 13 C 1.46175 * 120.00334 * 180.02562 * 11 10 5 14 14 H 1.07998 * 119.99380 * 353.80835 * 13 11 10 15 15 C 1.40116 * 120.00101 * 173.81091 * 13 11 10 16 16 N 1.30636 * 120.00604 * 6.12340 * 15 13 11 17 17 Si 1.86808 * 119.99682 * 186.12611 * 15 13 11 18 18 H 1.48502 * 109.47082 * 94.98254 * 17 15 13 19 19 H 1.48503 * 109.46772 * 214.98304 * 17 15 13 20 20 H 1.48500 * 109.46902 * 334.98203 * 17 15 13 21 21 H 1.09002 * 109.47195 * 89.99185 * 1 2 3 22 22 H 1.08994 * 109.47652 * 209.99464 * 1 2 3 23 23 H 1.09000 * 109.47112 * 329.99692 * 1 2 3 24 24 H 1.08007 * 119.87901 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.86886 * 179.72865 * 4 3 2 26 26 H 1.07991 * 119.92359 * 179.97438 * 7 6 5 27 27 H 1.09001 * 110.42131 * 118.75889 * 8 6 5 28 28 H 1.08991 * 110.42234 * 241.23438 * 8 6 5 29 29 H 1.09001 * 110.30121 * 118.93524 * 9 8 6 30 30 H 1.09006 * 110.29504 * 241.06720 * 9 8 6 31 31 H 0.96997 * 120.00487 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1971 0.0000 4 6 3.5782 1.2012 -0.0052 5 6 4.2863 -0.0041 0.0009 6 6 3.5811 -1.1986 0.0007 7 6 2.1999 -1.1967 0.0003 8 6 4.5719 -2.3411 0.0017 9 6 5.9488 -1.6572 0.0018 10 7 5.6638 -0.2199 0.0017 11 6 6.5974 0.7521 0.0014 12 8 6.2586 1.9215 0.0007 13 6 8.0167 0.4025 0.0018 14 1 8.3185 -0.6295 0.1033 15 6 8.9855 1.4062 -0.1294 16 7 8.6283 2.6627 -0.1318 17 14 10.7883 0.9474 -0.3010 18 1 11.1523 0.9004 -1.7400 19 1 11.6250 1.9622 0.3884 20 1 11.0204 -0.3850 0.3121 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5139 24 1 1.6596 2.1321 -0.0004 25 1 4.1133 2.1393 -0.0096 26 1 1.6599 -2.1319 -0.0003 27 1 4.4491 -2.9502 0.8973 28 1 4.4503 -2.9507 -0.8936 29 1 6.5072 -1.9314 0.8968 30 1 6.5078 -1.9324 -0.8927 31 1 9.2990 3.3576 -0.2223 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274723672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:59 Heat of formation + Delta-G solvation = -17.122310 kcal Electronic energy + Delta-G solvation = -15608.975443 eV Core-core repulsion = 13047.683531 eV Total energy + Delta-G solvation = -2561.291912 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04521 -37.19186 -35.45152 -32.77711 -31.38297 -31.07816 -28.35939 -27.12693 -25.41804 -22.53795 -22.05553 -20.29378 -19.35570 -16.91193 -15.81137 -15.44376 -15.27713 -14.64248 -14.37626 -13.65980 -13.33308 -13.21658 -12.70551 -12.69198 -12.12101 -12.02692 -11.60477 -11.53968 -11.37104 -11.27666 -10.96862 -10.85679 -10.55348 -10.35570 -10.23677 -9.21259 -8.90691 -8.20709 -7.83981 -6.70249 -6.41316 -4.86257 1.96928 2.06751 3.04224 3.11252 3.15046 3.91454 4.19269 4.25156 4.50563 5.03078 5.19244 5.41271 5.43084 5.55401 5.59087 5.73953 5.82672 5.86141 5.93511 6.07906 6.23067 6.37039 6.42790 6.44129 6.61760 6.89409 7.06896 7.21392 7.24119 7.31668 7.62326 7.97488 8.26002 8.79822 9.10909 10.29641 10.50368 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.048038 B = 0.006890 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.734939 B = 4062.992051 C = 4616.245701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.151 4.151 3 C -0.090 4.090 4 C -0.148 4.148 5 C 0.188 3.812 6 C -0.174 4.174 7 C -0.074 4.074 8 C -0.082 4.082 9 C 0.115 3.885 10 N -0.567 5.567 11 C 0.551 3.449 12 O -0.554 6.554 13 C -0.533 4.533 14 H 0.075 0.925 15 C 0.086 3.914 16 N -0.758 5.758 17 Si 0.914 3.086 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.116 0.884 25 H 0.140 0.860 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 -8.099 -0.087 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.153 4.153 3 C -0.109 4.109 4 C -0.169 4.169 5 C 0.087 3.913 6 C -0.178 4.178 7 C -0.093 4.093 8 C -0.119 4.119 9 C -0.009 4.009 10 N -0.288 5.288 11 C 0.360 3.640 12 O -0.436 6.436 13 C -0.568 4.568 14 H 0.093 0.907 15 C -0.136 4.136 16 N -0.386 5.386 17 Si 0.738 3.262 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.186 1.186 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.134 0.866 25 H 0.158 0.842 26 H 0.130 0.870 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.959 -7.187 -0.090 10.724 hybrid contribution 0.981 -0.266 -0.103 1.022 sum -6.978 -7.454 -0.193 10.212 Atomic orbital electron populations 1.20570 0.91902 1.01717 1.01252 1.19497 0.95217 0.93009 1.07537 1.20699 0.93394 0.97017 0.99752 1.21053 0.93330 0.97911 1.04629 1.18679 0.85125 0.93934 0.93581 1.20014 0.93622 0.94257 1.09938 1.19997 0.91676 0.97009 1.00625 1.21045 0.92474 0.96178 1.02196 1.21785 0.96092 0.80867 1.02144 1.46601 1.02940 1.07321 1.71977 1.18344 0.85350 0.82996 0.77347 1.90601 1.81246 1.17753 1.53972 1.20890 0.88344 0.94835 1.52741 0.90702 1.25778 1.00923 0.94304 0.92565 1.69985 1.35169 1.00149 1.33299 0.86243 0.81588 0.79318 0.79049 1.19544 1.20185 1.18637 0.92299 0.92459 0.92318 0.86645 0.84211 0.87042 0.90414 0.90409 0.91138 0.91030 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.02 36.00 0.36 -0.81 16 2 C -0.15 -2.42 5.89 -104.57 -0.62 -3.04 16 3 C -0.09 -1.63 9.68 -39.71 -0.38 -2.01 16 4 C -0.15 -3.28 9.45 -39.17 -0.37 -3.65 16 5 C 0.19 4.24 6.62 -83.64 -0.55 3.68 16 6 C -0.17 -3.24 6.23 -104.23 -0.65 -3.88 16 7 C -0.07 -1.21 9.70 -39.61 -0.38 -1.60 16 8 C -0.08 -1.28 6.94 -27.24 -0.19 -1.47 16 9 C 0.11 2.16 6.22 -3.64 -0.02 2.13 16 10 N -0.57 -13.71 3.12 -114.54 -0.36 -14.07 16 11 C 0.55 15.83 7.71 -13.08 -0.10 15.73 16 12 O -0.55 -17.71 13.19 5.15 0.07 -17.64 16 13 C -0.53 -14.71 9.02 -35.69 -0.32 -15.04 16 14 H 0.07 1.88 7.13 -52.49 -0.37 1.50 16 15 C 0.09 2.32 5.50 -17.36 -0.10 2.22 16 16 N -0.76 -22.08 11.85 55.55 0.66 -21.42 16 17 Si 0.91 19.46 29.56 -169.99 -5.03 14.43 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 25 H 0.14 3.49 6.26 -52.48 -0.33 3.16 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -32.90 266.69 -7.60 -40.50 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.64 Total: 1.91 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -3.33 Total: -7.72 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.30 Total: -35.49 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.07 Total: -17.64 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.90 -7.60 -40.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274723672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.375 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds