Wall clock time and date at job start Sun Mar 29 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38345 * 120.07897 * 2 1 4 4 C 1.37784 * 120.24608 * 180.24987 * 3 2 1 5 5 C 1.39786 * 120.26575 * 359.45890 * 4 3 2 6 6 C 1.38715 * 119.01158 * 0.54222 * 5 4 3 7 7 C 1.38122 * 120.47357 * 359.72812 * 6 5 4 8 8 C 1.51225 * 108.51601 * 179.75098 * 6 5 4 9 9 C 1.53747 * 104.51614 * 359.97438 * 8 6 5 10 10 N 1.39440 * 129.33794 * 180.23561 * 5 4 3 11 11 C 1.34770 * 124.93908 * 0.25084 * 10 5 4 12 12 O 1.21748 * 120.00096 * 0.02562 * 11 10 5 13 13 C 1.46175 * 120.00334 * 180.02562 * 11 10 5 14 14 H 1.07998 * 119.99380 * 353.80835 * 13 11 10 15 15 C 1.40116 * 120.00101 * 173.81091 * 13 11 10 16 16 N 1.30636 * 120.00604 * 6.12340 * 15 13 11 17 17 Si 1.86808 * 119.99682 * 186.12611 * 15 13 11 18 18 H 1.48502 * 109.47082 * 94.98254 * 17 15 13 19 19 H 1.48503 * 109.46772 * 214.98304 * 17 15 13 20 20 H 1.48500 * 109.46902 * 334.98203 * 17 15 13 21 21 H 1.09002 * 109.47195 * 89.99185 * 1 2 3 22 22 H 1.08994 * 109.47652 * 209.99464 * 1 2 3 23 23 H 1.09000 * 109.47112 * 329.99692 * 1 2 3 24 24 H 1.08007 * 119.87901 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.86886 * 179.72865 * 4 3 2 26 26 H 1.07991 * 119.92359 * 179.97438 * 7 6 5 27 27 H 1.09001 * 110.42131 * 118.75889 * 8 6 5 28 28 H 1.08991 * 110.42234 * 241.23438 * 8 6 5 29 29 H 1.09001 * 110.30121 * 118.93524 * 9 8 6 30 30 H 1.09006 * 110.29504 * 241.06720 * 9 8 6 31 31 H 0.96997 * 120.00487 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1971 0.0000 4 6 3.5782 1.2012 -0.0052 5 6 4.2863 -0.0041 0.0009 6 6 3.5811 -1.1986 0.0007 7 6 2.1999 -1.1967 0.0003 8 6 4.5719 -2.3411 0.0017 9 6 5.9488 -1.6572 0.0018 10 7 5.6638 -0.2199 0.0017 11 6 6.5974 0.7521 0.0014 12 8 6.2586 1.9215 0.0007 13 6 8.0167 0.4025 0.0018 14 1 8.3185 -0.6295 0.1033 15 6 8.9855 1.4062 -0.1294 16 7 8.6283 2.6627 -0.1318 17 14 10.7883 0.9474 -0.3010 18 1 11.1523 0.9004 -1.7400 19 1 11.6250 1.9622 0.3884 20 1 11.0204 -0.3850 0.3121 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5139 24 1 1.6596 2.1321 -0.0004 25 1 4.1133 2.1393 -0.0096 26 1 1.6599 -2.1319 -0.0003 27 1 4.4491 -2.9502 0.8973 28 1 4.4503 -2.9507 -0.8936 29 1 6.5072 -1.9314 0.8968 30 1 6.5078 -1.9324 -0.8927 31 1 9.2990 3.3576 -0.2223 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274723672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:58 Heat of formation + Delta-G solvation = -38.268557 kcal Electronic energy + Delta-G solvation = -15609.892413 eV Core-core repulsion = 13047.683531 eV Total energy + Delta-G solvation = -2562.208882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61942 -38.96638 -37.17461 -34.84166 -32.91736 -32.54131 -29.81424 -28.95397 -26.93060 -24.13790 -23.59547 -21.82592 -21.00335 -18.76048 -17.82214 -17.06450 -16.77843 -16.34712 -15.78098 -15.29087 -14.90601 -14.53298 -14.35256 -14.30363 -13.64147 -13.28167 -13.15582 -12.95669 -12.90596 -12.77027 -12.63961 -12.47370 -12.22513 -12.04716 -11.68682 -11.05476 -10.64259 -9.98100 -9.64069 -8.44649 -8.36284 -7.00173 0.50907 0.56618 1.36001 1.37831 1.54541 2.15423 2.30135 2.58042 2.89858 3.47806 3.67527 3.81276 4.14739 4.24284 4.34087 4.45023 4.47988 4.67506 4.79635 4.93845 4.96694 5.00216 5.12107 5.17549 5.19301 5.24092 5.42333 5.58202 5.74916 5.80063 5.91308 6.15690 6.45020 6.70533 7.17809 8.22383 8.50113 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.048038 B = 0.006890 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.734939 B = 4062.992051 C = 4616.245701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.134 4.134 3 C -0.097 4.097 4 C -0.183 4.183 5 C 0.131 3.869 6 C -0.164 4.164 7 C -0.071 4.071 8 C -0.069 4.069 9 C 0.104 3.896 10 N -0.583 5.583 11 C 0.530 3.470 12 O -0.609 6.609 13 C -0.557 4.557 14 H 0.096 0.904 15 C 0.027 3.973 16 N -0.815 5.815 17 Si 1.006 2.994 18 H -0.261 1.261 19 H -0.270 1.270 20 H -0.243 1.243 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.133 0.867 25 H 0.091 0.909 26 H 0.159 0.841 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -11.582 -0.176 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C -0.115 4.115 4 C -0.204 4.204 5 C 0.032 3.968 6 C -0.167 4.167 7 C -0.089 4.089 8 C -0.106 4.106 9 C -0.018 4.018 10 N -0.305 5.305 11 C 0.339 3.661 12 O -0.496 6.496 13 C -0.593 4.593 14 H 0.114 0.886 15 C -0.189 4.189 16 N -0.444 5.444 17 Si 0.824 3.176 18 H -0.185 1.185 19 H -0.195 1.195 20 H -0.166 1.166 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.151 0.849 25 H 0.109 0.891 26 H 0.176 0.824 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.265 -10.730 -0.175 14.177 hybrid contribution 1.145 0.809 -0.067 1.404 sum -8.119 -9.921 -0.242 12.822 Atomic orbital electron populations 1.20670 0.88163 1.03545 1.02871 1.20075 0.97752 0.91894 1.03814 1.20927 0.91677 0.99322 0.99607 1.20945 0.95267 0.96483 1.07754 1.19084 0.84910 0.95705 0.97059 1.20474 0.94906 0.93502 1.07866 1.20546 0.90761 0.98947 0.98653 1.21125 0.88956 0.95230 1.05255 1.22100 0.98731 0.78311 1.02617 1.46362 1.03323 1.08660 1.72184 1.18806 0.86925 0.83245 0.77106 1.90550 1.82468 1.20205 1.56344 1.21412 0.88500 0.96186 1.53156 0.88619 1.27135 1.06955 0.93731 0.91089 1.70161 1.37576 1.01959 1.34676 0.84892 0.73529 0.79738 0.79481 1.18534 1.19477 1.16615 0.90589 0.89917 0.91355 0.84870 0.89112 0.82381 0.87178 0.87182 0.90673 0.90569 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 10.02 71.23 0.71 -1.12 16 2 C -0.13 -3.90 5.89 -19.83 -0.12 -4.01 16 3 C -0.10 -3.53 9.68 22.19 0.21 -3.32 16 4 C -0.18 -8.72 9.45 22.54 0.21 -8.51 16 5 C 0.13 6.14 6.62 38.42 0.25 6.39 16 6 C -0.16 -5.75 6.23 -19.61 -0.12 -5.87 16 7 C -0.07 -2.02 9.70 22.25 0.22 -1.80 16 8 C -0.07 -1.92 6.94 30.27 0.21 -1.71 16 9 C 0.10 3.87 6.22 86.63 0.54 4.41 16 10 N -0.58 -29.53 3.12 -634.49 -1.98 -31.50 16 11 C 0.53 32.57 7.71 86.30 0.67 33.23 16 12 O -0.61 -42.57 13.19 -4.50 -0.06 -42.63 16 13 C -0.56 -31.99 9.02 24.79 0.22 -31.77 16 14 H 0.10 4.86 7.13 -2.91 -0.02 4.84 16 15 C 0.03 1.51 5.50 85.33 0.47 1.98 16 16 N -0.81 -50.16 11.85 21.85 0.26 -49.90 16 17 Si 1.01 40.36 29.56 68.60 2.03 42.39 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.24 -8.91 7.11 99.48 0.71 -8.21 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 23 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 24 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 25 H 0.09 5.14 6.26 -2.91 -0.02 5.12 16 26 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.28 15.43 8.29 -92.71 -0.77 14.66 16 Total: -1.00 -80.24 266.69 4.86 -75.38 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.13 Total: 18.38 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.48 Total: -12.11 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.72 Total: -81.40 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.06 Total: -42.63 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -80.24 4.86 -75.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274723672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.112 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds