Wall clock time and date at job start Sun Mar 29 2020 22:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 120.14618 * 2 1 4 4 C 1.37904 * 119.82924 * 180.50104 * 3 2 1 5 5 C 1.50701 * 119.71077 * 179.73776 * 4 3 2 6 6 C 1.38982 * 120.58128 * 359.45753 * 4 3 2 7 7 C 1.37669 * 119.51477 * 359.82453 * 6 4 3 8 8 C 1.37957 * 120.13868 * 179.73364 * 2 1 3 9 9 C 1.50814 * 122.34080 * 180.88592 * 7 6 4 10 10 N 1.46680 * 109.67433 * 348.30364 * 9 7 6 11 11 C 1.36932 * 121.34033 * 224.48197 * 10 9 7 12 12 H 1.07997 * 120.00823 * 155.38099 * 11 10 9 13 13 C 1.38821 * 119.99616 * 335.37719 * 11 10 9 14 14 N 1.31613 * 119.99991 * 344.27136 * 13 11 10 15 15 Si 1.86797 * 119.99929 * 164.26941 * 13 11 10 16 16 H 1.48497 * 109.47129 * 89.99956 * 15 13 11 17 17 H 1.48495 * 109.47170 * 210.00500 * 15 13 11 18 18 H 1.48499 * 109.47290 * 330.00215 * 15 13 11 19 19 C 1.47235 * 117.32753 * 44.45634 * 10 9 7 20 20 C 1.50594 * 117.61813 * 179.12960 * 6 4 3 21 21 H 1.09000 * 109.46584 * 270.27027 * 1 2 3 22 22 H 1.08994 * 109.46864 * 30.26457 * 1 2 3 23 23 H 1.08993 * 109.47051 * 150.27099 * 1 2 3 24 24 H 1.08006 * 120.08240 * 0.22621 * 3 2 1 25 25 H 1.08996 * 109.47348 * 269.72614 * 5 4 3 26 26 H 1.09000 * 109.47074 * 149.71951 * 5 4 3 27 27 H 1.09003 * 109.46888 * 29.72553 * 5 4 3 28 28 H 1.07997 * 119.75242 * 359.97438 * 8 2 1 29 29 H 1.08998 * 109.43697 * 108.36877 * 9 7 6 30 30 H 1.09004 * 109.43851 * 228.28501 * 9 7 6 31 31 H 0.97002 * 120.00212 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.76805 * 55.40918 * 19 10 9 33 33 H 1.08993 * 109.77332 * 176.14164 * 19 10 9 34 34 H 1.09001 * 109.20437 * 280.84412 * 20 6 4 35 35 H 1.08997 * 109.20386 * 40.14029 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1956 0.0000 4 6 3.5804 1.1880 -0.0105 5 6 4.3345 2.4928 -0.0164 6 6 4.2809 -0.0123 -0.0097 7 6 3.5881 -1.2019 0.0053 8 6 2.1997 -1.1931 0.0055 9 6 4.2831 -2.5401 0.0267 10 7 5.7119 -2.3590 -0.2515 11 6 6.3785 -3.1824 -1.1191 12 1 7.2713 -2.8336 -1.6167 13 6 5.9066 -4.4657 -1.3591 14 7 5.0229 -5.0047 -0.5463 15 14 6.5260 -5.4276 -2.8358 16 1 7.7276 -6.2095 -2.4487 17 1 5.4634 -6.3526 -3.3051 18 1 6.8794 -4.4851 -3.9277 19 6 6.4005 -1.2560 0.4392 20 6 5.7849 0.0570 -0.0418 21 1 -0.3632 0.0048 1.0277 22 1 -0.3633 0.8876 -0.5179 23 1 -0.3633 -0.8923 -0.5096 24 1 1.6651 2.1331 0.0037 25 1 4.5127 2.8047 -1.0455 26 1 5.2885 2.3634 0.4946 27 1 3.7475 3.2540 0.4975 28 1 1.6579 -2.1273 0.0103 29 1 4.1598 -2.9972 1.0085 30 1 3.8457 -3.1883 -0.7327 31 1 4.6929 -5.9012 -0.7142 32 1 6.2652 -1.3540 1.5163 33 1 7.4631 -1.2761 0.1978 34 1 6.1130 0.2541 -1.0624 35 1 6.1202 0.8680 0.6047 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274952671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:51 Heat of formation + Delta-G solvation = 30.693189 kcal Electronic energy + Delta-G solvation = -16145.548297 eV Core-core repulsion = 13722.162915 eV Total energy + Delta-G solvation = -2423.385382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.47847 -36.04115 -33.80689 -32.20360 -31.04179 -29.29274 -27.23624 -25.80188 -25.43087 -22.70684 -21.55038 -20.03872 -18.68953 -16.68487 -15.42258 -15.12135 -14.77428 -14.26032 -13.70796 -13.47779 -13.28619 -12.93524 -12.71525 -12.57325 -12.33442 -12.13568 -11.71200 -11.52383 -11.32462 -11.08100 -10.84948 -10.63707 -10.44006 -10.30728 -10.01152 -9.82535 -9.64582 -8.61924 -7.89664 -7.67122 -6.73446 -5.80231 -3.19464 1.90943 2.01321 3.37974 3.44767 3.47451 4.27563 4.49117 5.16849 5.23834 5.33762 5.42178 5.48763 5.57816 5.62812 5.69030 5.79199 5.83314 5.97396 6.04723 6.11124 6.13274 6.23230 6.29807 6.39036 6.66025 6.72116 6.77309 6.91869 7.06778 7.09661 7.26153 7.30385 7.60563 7.73070 7.78934 8.38552 9.19102 9.81881 10.40467 11.30250 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.029616 B = 0.008109 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.218866 B = 3452.324288 C = 4066.811062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.072 4.072 7 C -0.069 4.069 8 C -0.128 4.128 9 C 0.206 3.794 10 N -0.594 5.594 11 C -0.247 4.247 12 H 0.069 0.931 13 C 0.000 4.000 14 N -0.908 5.908 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.142 3.858 20 C -0.098 4.098 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.254 0.746 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 11.259 1.611 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.157 4.157 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.072 4.072 7 C -0.071 4.071 8 C -0.147 4.147 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.377 4.377 12 H 0.087 0.913 13 C -0.198 4.198 14 N -0.553 5.553 15 Si 0.734 3.266 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.015 3.985 20 C -0.136 4.136 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.128 0.872 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.017 11.065 1.582 12.251 hybrid contribution 0.134 -0.565 -0.763 0.959 sum -4.882 10.499 0.819 11.608 Atomic orbital electron populations 1.20697 0.91975 1.02071 1.01620 1.19690 0.95327 0.93362 1.01356 1.20561 0.93356 0.96856 1.04965 1.19880 0.93620 0.94766 1.01250 1.20810 1.00106 0.94198 1.01753 1.19392 0.95663 0.91537 1.00593 1.20971 0.93495 0.97676 0.94940 1.20960 0.93865 0.97155 1.02699 1.19748 0.83419 0.88312 1.00484 1.43993 1.04316 1.33208 1.50078 1.19166 1.09343 0.92568 1.16594 0.91334 1.25007 0.99895 0.96058 0.98874 1.70006 1.34199 1.15113 1.35997 0.86260 0.77907 0.79685 0.82743 1.21363 1.21530 1.20519 1.20916 0.95713 0.87208 0.94637 1.21013 0.91599 0.99777 1.01241 0.91828 0.92258 0.91882 0.87243 0.91764 0.91297 0.92427 0.86585 0.94300 0.88661 0.93557 0.95675 0.92197 0.91372 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.02 36.01 0.36 -1.00 16 2 C -0.10 -1.61 5.87 -104.71 -0.62 -2.22 16 3 C -0.14 -2.23 9.34 -39.69 -0.37 -2.60 16 4 C -0.10 -1.61 5.89 -104.47 -0.61 -2.23 16 5 C -0.11 -1.48 9.51 36.01 0.34 -1.14 16 6 C -0.07 -1.41 5.76 -104.61 -0.60 -2.01 16 7 C -0.07 -1.49 5.82 -104.55 -0.61 -2.10 16 8 C -0.13 -2.44 9.28 -39.46 -0.37 -2.81 16 9 C 0.21 5.13 4.86 -5.04 -0.02 5.11 16 10 N -0.59 -15.32 2.97 -173.93 -0.52 -15.84 16 11 C -0.25 -6.88 9.69 -15.06 -0.15 -7.02 16 12 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 13 C 0.00 -0.01 4.99 -17.43 -0.09 -0.10 16 14 N -0.91 -26.40 11.10 55.49 0.62 -25.79 16 15 Si 0.90 21.87 29.58 -169.99 -5.03 16.84 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.14 3.05 6.52 -3.75 -0.02 3.02 16 20 C -0.10 -1.81 5.24 -28.04 -0.15 -1.96 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 23 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 24 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.87 5.90 -51.93 -0.31 0.56 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.12 2.10 8.05 -52.49 -0.42 1.68 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 2.61 6.34 -51.93 -0.33 2.28 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.98 6.12 -51.93 -0.32 0.66 16 LS Contribution 281.35 15.07 4.24 4.24 Total: -1.00 -29.90 281.35 -8.73 -38.62 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.13 Total: -1.01 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.90 Total: -17.07 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.10 Total: -41.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.90 -8.73 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274952671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds